PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002863.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 399aa    MW: 44178.9 Da    PI: 4.7637
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002863.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.5e-12205261155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++g+++A+++d  +   g +rk  + g+++t+e+Aa+a++ a++k++g
  Aco002863.1 205 SNYHGVTRHRWSGKYEAHLWDnTCRvEGrRRKGKQ-GSYDTEEKAARAYDLAALKYWG 261
                  569******************66557666557777.********************98 PP
2AP2361.7e-11326370855
          AP2   8 wdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +l+g
  Aco002863.1 326 RRQKDGRWQARIGLV-----AdtRDIYLGTFKTEEEAAEAYDIAAVELRG 370
                  56779******9996.....345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-15205271IPR016177DNA-binding domain
CDDcd000185.78E-19205271No hitNo description
PfamPF008473.5E-9206261IPR001471AP2/ERF domain
PROSITE profilePS5103218.083206269IPR001471AP2/ERF domain
SMARTSM003801.6E-21206275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-14206270IPR001471AP2/ERF domain
PRINTSPR003673.2E-5207218IPR001471AP2/ERF domain
PRINTSPR003673.2E-5251271IPR001471AP2/ERF domain
PROSITE profilePS5103216.094315378IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-14325379IPR016177DNA-binding domain
CDDcd000181.97E-19326379No hitNo description
PfamPF008471.3E-4326370IPR001471AP2/ERF domain
SMARTSM003801.8E-20326384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-16326378IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGKLDGEVNK QREEVDCSDC RIQSTLDDGD DTKSQRGDSF NLNSLPCVAA SRKDDSLEDP  60
VVGSKEDSLE LIGNEKSSNG DAANVVRSEE YTDGSVFGNK DGSLKVLGDE ERSDCAAVVK  120
KDEPIKISED WECTSGDGVA RKDDCAKVSG NEEKGGIAIV KKDDSMEATS CSAAATPNCE  180
NNSEKKIGGI AGRISAVKSP IPRSSNYHGV TRHRWSGKYE AHLWDNTCRV EGRRRKGKQG  240
SYDTEEKAAR AYDLAALKYW GASTKLNFPV SEYEKELEDV KDMTREECVA YLRRILVVRG  300
FPVISPLYFF YFVIDYPSTK TYIDDRRQKD GRWQARIGLV ADTRDIYLGT FKTEEEAAEA  360
YDIAAVELRG RNAVTNFDIG NYIDRGPKRV EEAGVQQL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231238GRRRKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089961.10.0AP2-like ethylene-responsive transcription factor AIL7 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-56AINTEGUMENTA-like 5