PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco002750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ZF-HD | ||||||||
Protein Properties | Length: 227aa MW: 24298.9 Da PI: 7.845 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.5 | 2.8e-32 | 74 | 126 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 rY+eClkNhA+ +GghavDGCgEfmp+ ge+gt ++l+CaACgCHRnFHR++++ Aco002750.1 74 RYRECLKNHAVGIGGHAVDGCGEFMPA-GEDGTLDGLRCAACGCHRNFHRKDPA 126 8*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-21 | 73 | 124 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.5E-30 | 74 | 124 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.4E-29 | 74 | 124 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.928 | 75 | 124 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-31 | 150 | 225 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.04E-19 | 150 | 224 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.9E-24 | 163 | 220 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEFEEQEEEE GEEMGMGMEM ETPSAAAANS GRPGGGGGVA GVVGGWSGQQ QQRQQQRQQQ 60 RQQRKAAGGV GMGRYRECLK NHAVGIGGHA VDGCGEFMPA GEDGTLDGLR CAACGCHRNF 120 HRKDPAAHPG QLALPSSSGG HSRSREEGED GGGGGGGSTS GGRKRFRTKF TQEQKDKMLA 180 FAERVGWRIQ KHDEAAVQQF CDEACIHRHV LKVWMHNNKN TLGKKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-27 | 164 | 221 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972655 | 2e-68 | EU972655.1 Zea mays clone 385315 ZF-HD protein dimerisation region containing protein mRNA, complete cds. | |||
GenBank | EU974775 | 2e-68 | EU974775.1 Zea mays clone 457946 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020090870.1 | 1e-164 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9SB61 | 2e-68 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A200PUE8 | 4e-79 | A0A200PUE8_9MAGN; ZF-HD homeobox protein | ||||
STRING | evm.model.supercontig_55.54 | 4e-77 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3950 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 6e-64 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Aco002750.1 |
Publications ? help Back to Top | |||
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