PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002322.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 307aa    MW: 33893.1 Da    PI: 8.7967
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002322.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.82.5e-1741130186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  v aL++a++ ++   +r+klk+++We+v++++      r+ +  ++++qCk+k e+++kry+ +++ +        s++p+f++l+
  Aco002322.1  41 EWSDAAVAALLDAYEAKWALRNRAKLKGHDWEDVARAVscragdRSCKGPKTATQCKNKVESMKKRYRSEAAVRPAVV--GGSKWPLFHRLD 130
                  5*************************************99997766677899***********************974..3447******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-1939130No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEEKGSRAKE EKELLWISSS SNNNNNNNKE ELAARPGKRD EWSDAAVAAL LDAYEAKWAL  60
RNRAKLKGHD WEDVARAVSC RAGDRSCKGP KTATQCKNKV ESMKKRYRSE AAVRPAVVGG  120
SKWPLFHRLD GLVRCRGVGA AAEAMIGLES EEQHEQSAAA AVAPAGEVSL PKADGDAVIV  180
EQGECGDTPA KENGNEATNN KEVQGNSTQS NDDGSREKRE TAKNNRKRKR RKEQKDVMSE  240
VIRSIQYFAE VVLKVEHARM EAMREVEMIR AEAEAKRGEM DLKRTEIIAS TQLQIARLFA  300
KNCGNI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224231NRKRKRRK
2225230RKRKRR
3225231RKRKRRK
4225232RKRKRRKE
5226231KRKRRK
6227232RKRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6611231e-174KM661123.1 Ananas bracteatus clone 41985 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087627.10.0trihelix transcription factor ASIL2-like isoform X1
TrEMBLA0A199VYF60.0A0A199VYF6_ANACO; Trihelix transcription factor ASIL2
STRINGXP_008782031.12e-67(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.13e-56sequence-specific DNA binding transcription factors