PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco002202.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | YABBY | ||||||||
Protein Properties | Length: 189aa MW: 20872.4 Da PI: 7.8504 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 228.3 | 2e-70 | 2 | 164 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +v+ ++e+vCyv+C+fCntil+vsvPs+s+f ++tvrCG Ct+llsv++ +q l+ + + + +++++ ++++++ ++ ++s+ +++s Aco002202.1 2 SVQIAPEHVCYVHCSFCNTILVVSVPSNSMFDILTVRCGNCTNLLSVDMGAVTQKLPLQGS---QKHAQQVHNIGSHHDHNSVDCGGSSSK-CNRRSP 95 78899****************************************************9986...445556667777766655444444333.333443 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 l ++ +++ ++ p PPekrqrvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Aco002202.1 96 VL-DSIQNDPHKTLP-TPPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 164 44.333344444444.68***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-70 | 6 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.29E-9 | 103 | 158 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.0E-5 | 113 | 158 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MSVQIAPEHV CYVHCSFCNT ILVVSVPSNS MFDILTVRCG NCTNLLSVDM GAVTQKLPLQ 60 GSQKHAQQVH NIGSHHDHNS VDCGGSSSKC NRRSPVLDSI QNDPHKTLPT PPPEKRQRVP 120 SAYNRFIKEE IQRIKANNPD ISHREAFSTA AKNWAHFPHI HFGLTHDNDK QHNEAIATHG 180 NPEACGLY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM663674 | 4e-75 | KM663674.1 Ananas bracteatus clone 48195 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020085765.1 | 1e-140 | protein YABBY 2-like isoform X1 | ||||
Refseq | XP_020085766.1 | 1e-140 | protein YABBY 2-like isoform X1 | ||||
Refseq | XP_020085767.1 | 1e-140 | protein YABBY 2-like isoform X1 | ||||
Swissprot | Q10FZ7 | 9e-69 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A199VWT0 | 1e-133 | A0A199VWT0_ANACO; Protein YABBY 2 | ||||
STRING | XP_010247851.1 | 3e-77 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 3e-63 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco002202.1 |