PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001588.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 329aa    MW: 36227.6 Da    PI: 6.8283
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001588.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +   +G+g+W++++++ g++R++k+c++r+ +yl
      Aco001588.1 14 KGPWTAEEDAKLLAYTSTHGTGNWTSVPQKAGLKRCGKSCRLRYTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding40.65.7e-1370110446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +T+ E+e ++ ++++ G++ W+ Ia+ ++ gRt++++k++w++
      Aco001588.1  70 FTPAEEEHIITLHAMIGSR-WSIIANQLP-GRTDNDIKNYWNT 110
                      8******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129422.987965IPR017930Myb domain
SuperFamilySSF466891.8E-2911108IPR009057Homeodomain-like
SMARTSM007174.8E-141363IPR001005SANT/Myb domain
PfamPF002492.7E-151461IPR001005SANT/Myb domain
CDDcd001675.42E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2265116IPR009057Homeodomain-like
PROSITE profilePS5129416.21266116IPR017930Myb domain
SMARTSM007171.7E-1066114IPR001005SANT/Myb domain
CDDcd001671.00E-870112No hitNo description
PfamPF002497.1E-1270110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRPPCCDKA NVKKGPWTAE EDAKLLAYTS THGTGNWTSV PQKAGLKRCG KSCRLRYTNY  60
LRPNLKHEGF TPAEEEHIIT LHAMIGSRWS IIANQLPGRT DNDIKNYWNT KLSKKLRRCG  120
IDPVTHRPIS EVMHSINKLS NHPAPPSYSS SSSSGKSRSI LTCDHDRISC FNRDLKSLFL  180
SNPTPESSIP PSDTAPISMQ PSATLPQVAT ETEWSDFLIE SVIADHPEGL DFDHCGQLSN  240
CGASSSTCTF QGPNCNIVRM EGLKREIGST NTEEYALISE VNMYEKVNSV QGGSSQGSSS  300
FIDAMLARDR EMGSDQFPEL PFDAYNSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107891.10.0transcription repressor MYB6
TrEMBLA0A199VBM71e-133A0A199VBM7_ANACO; Transcription factor MYB35
STRINGXP_008804161.11e-106(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118743439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-65MYB family protein