PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001562.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Trihelix

Protein Properties

Length: 319aa MW: 37373.1 Da PI: 7.8525

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001562.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75	1.2e-23	59	140	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ e+ + ++ar e+++++ ++k++kplWe+vs+++r +gf r+p qCk+kw+nl +r+k +++e++ s++++p++++++ Aco001562.1 59 QWSHAETAEFLAARAELDRSFAAAKRNKPLWEAVSARLRLKGFARTPDQCKSKWKNLLTRFKGSEAMEQE----SERQFPFYEEMR 140 7******************************************************************8....46789***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.2E-4	56	118	IPR001005	SANT/Myb domain
Pfam	PF13837	2.3E-20	58	142	No hit	No description
CDD	cd12203	2.04E-19	58	123	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.2E-4	59	116	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.712	60	116	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MAHHLYPHLH FHGVDDASYY ELNVVDVDPP LLQPPPPPLP PLPPPRPHER EAAASGVPQW 60 SHAETAEFLA ARAELDRSFA AAKRNKPLWE AVSARLRLKG FARTPDQCKS KWKNLLTRFK 120 GSEAMEQESE RQFPFYEEMR RIFSYRMERL LAFEKSSAKK KKKTKGKELE EELEEEEEKE 180 EKEEEEEEEE EEERRKRSTN IKNKKKRRWR RKRKGAGAGA GAGAGVVEEV EGALRELMRR 240 QAEMEERWME AAEAREAERR EKEGEWRRAM ANLWEERLAM ERRWRQHDEE RRARAEARAE 300 RQHALVSALL AKFQGEGS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	213	RKRSTNIKNKKKRRWRRKRK
2	203	207	KKKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009380688.1	3e-61	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	A0A199VB95	0.0	A0A199VB95_ANACO; Trihelix transcription factor GT-3b

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12595	31	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	4e-35	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Aco001562.1