PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001443.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 630aa    MW: 69869.7 Da    PI: 8.0982
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001443.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07521570147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      Aco001443.1 521 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 570
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542369.83E-6323396IPR029071Ubiquitin-related domain
PROSITE profilePS500538.568329393IPR000626Ubiquitin domain
PROSITE profilePS5129415.285516575IPR017930Myb domain
SMARTSM007171.2E-7520573IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10521571IPR009057Homeodomain-like
CDDcd116604.30E-17522572No hitNo description
SuperFamilySSF466894.27E-15522603IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MVFQKRSDHG SCSYRAPTML HFPQSAKGKR SARKKCDDKK SDDNSPMFSL EAFELLATVA  60
GKLLTEKESS SSSANLTNQP NLTVSKDDIK QERFDELKPL IAESFDQVSS NEKELIVISS  120
EYKGDGPKTP PQCEVGIVKT EMDGSSPEMY CLVDRMDLDV KPSNGLVSSD SSAELPLYRD  180
CDNPHSSSFS KHQVGKELAV NRDDDENSSG CRSIINSKAF NRRMRKILAS KSRKVATDQL  240
RDREISNTDV DSKPVFYKKR MFYTRQRTQR STFKKRKLFK NCSILPSHAN GCIKIEESDL  300
LETSHGAKGA TSSSMTPQIP SFESKDDHVK LSIKSFKVPE LFIEIPETAT VGSLKRTVME  360
AVTAFLGGGL SVGVLLEGKK IRDDNRTLKQ AGIAHSGLNN LGFTLEPNSA PDPVELTVQE  420
DANFLDSSDV TEPLARILPD ECPLDNEASD PNSQPLFTST PNCAESDRDS IHSPADYPSP  480
DSDKNSNSRA IVPVPPVNAE ALAVVPLRKS RRSELAQRRI RRPFSVSEVE ALVQAVEKLG  540
TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQR RRGEPVPQEL LDRVLAAQAY  600
WAQQQAKLQY KSASGPPQLI AQSLAEEDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-545086074103Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257276KKRMFYTRQRTQRSTFKKRK
2268276QRSTFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6659011e-104KM665901.1 Ananas bracteatus clone 51087 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020108416.10.0telomere repeat-binding protein 5-like
RefseqXP_020108417.10.0telomere repeat-binding protein 5-like
RefseqXP_020108418.10.0telomere repeat-binding protein 5-like
RefseqXP_020108419.10.0telomere repeat-binding protein 5-like
SwissprotQ6R0E31e-120TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A199VCN00.0A0A199VCN0_ANACO; Telomere repeat-binding protein 5
STRINGGSMUA_Achr8P20810_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5245714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-104TRF-like 2