PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001263.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

ZF-HD

Protein Properties

Length: 331aa MW: 34880.1 Da PI: 4.6829

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001263.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.6	4.6e-31	99	151	5	58
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 rY+eClkNhA+ +GghavDGCgEfm++ geegt +al+CaAC CHRnFHR+e+ Aco001263.1 99 RYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGTLDALRCAACSCHRNFHRKESP 151 8***********************9.999******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-23	86	149	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.2E-29	99	149	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	9.6E-29	99	150	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.612	100	149	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.4E-18	257	328	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-30	257	329	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.1E-24	267	323	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEFEEHDEAE EEEEEEEEEE EEEEEEEEEE EEEEEEGEME VAAAGSSYEG PSGAGNSRRE 60 DQGGGAASGR GGGGAEGGPG GSSIIINRKM TGAGGGGGRY RECLKNHAVG IGGHAVDGCG 120 EFMAAGEEGT LDALRCAACS CHRNFHRKES PDSAAAITDA ALPTAAAAAL QYQYHHHQQF 180 SPYYRTPAGY LHQPPPHLQI SASAAGQQHR APPPPPALAL PSTSGGGREE GEDVSNPAMM 240 MMMMMGGGGA GAGAGAASGS GGGASGKKRF RTKFTQEQKD KMLAFAERVG WRLQKHDEAA 300 VQQFCTDACI KRHVLKVWMH NNKHTLGKKP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-24	268	325	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	9e-56	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020108939.1	0.0	zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	8e-97	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A199UQM3	0.0	A0A199UQM3_ANACO; Zinc-finger homeodomain protein 1
STRING	OMERI09G10210.1	2e-95	(Oryza meridionalis)
STRING	OPUNC09G11630.1	3e-95	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-59	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Aco001263.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]