PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001232.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Trihelix

Protein Properties

Length: 311aa MW: 35373.5 Da PI: 4.9675

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001232.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.9	6.1e-19	43	125	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ e+ +Li+a+++++ +l+rg+lk+++Weev++ + ++ gfer + +qC++k+e+l+kry++++ + s +pyf++++ Aco001232.1 43 WSHLETVHLIDAYEQRWYALKRGQLKAQQWEEVAAEVaARCGFERpskTGTQCRHKIEKLRKRYRAERLRPVA------SPWPYFERID 125 *********************************9977789998766889**********98877765......579*9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.8E-20	41	127	No hit	No description
PROSITE profile	PS50090	6.144	42	103	IPR017877	Myb-like domain
SMART	SM00595	8.5E-5	50	129	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MPPPNSNPNP NPNPNPNPSP ERRPLPPPPP APATRRLGPG QPWSHLETVH LIDAYEQRWY 60 ALKRGQLKAQ QWEEVAAEVA ARCGFERPSK TGTQCRHKIE KLRKRYRAER LRPVASPWPY 120 FERIDRMERG PMPISVRPPP SRLPQALPIA SSDEENDDAE DDDGAGEDDG VRIASNTRSI 180 NGILRESSWG FPRASANPPP LPPRKLSHYQ KVEAEDDDDD DDDEDDEEEE AEEDVGVKLM 240 SQLATVVRRF GDGLERLEKR RMELMREIER DWMEMETKRA EMVMESQRYL VETIAGAFTS 300 AKKAKKARDS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020082450.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A199VLQ4	0.0	A0A199VLQ4_ANACO; Trihelix transcription factor ASIL2
STRING	GSMUA_Achr6P04170_001	3e-89	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10078	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	6e-22	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Aco001232.1