PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000403.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 322aa    MW: 36374.6 Da    PI: 7.9176
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000403.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.24.1e-20261061399
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   +rl++p kf+++++  +e+s t++le ++g  W+v l  +k+ ++++l+ GW++F k ++Lke Df+vF++dg++ f   v +f++
  Aco000403.1  26 DQRLRIPPKFMKHIS--EETSETVILEGPDGINWSVGL--EKTIDGTFLSIGWSSFIKGHDLKEHDFLVFEYDGDMHF--SVLLFDT 106
                  457********7776..44778****************..**********************************9999..8888876 PP
2B365.57.9e-21224311999
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +  +s  l++p +f +eh   ++++++++l+d+sg+ W vk+   +k+s + ++++GW  Fv+ n+Lk+gDf+vF+l+g  ef  +v++fr+
  Aco000403.1 224 NICRSYTLRIPASFWREHL--PTRKMEMVLRDPSGKAWIVKFLPgSKGSLKNLISAGWTAFVRGNELKVGDFCVFELVGPVEF--HVHIFRA 311
                  45566789**********5..46889****************445666666**************************997777..*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2411109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2313109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.31114107IPR003340B3 DNA binding domain
SMARTSM010191.5E-1717107IPR003340B3 DNA binding domain
CDDcd100172.02E-2017105No hitNo description
PfamPF023623.6E-1726105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-27208312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-27209311IPR015300DNA-binding pseudobarrel domain
CDDcd100174.22E-26214310No hitNo description
PROSITE profilePS5086316.172216312IPR003340B3 DNA binding domain
SMARTSM010194.9E-17216312IPR003340B3 DNA binding domain
PfamPF023624.8E-19219311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVGGSRSRSR RRRRPRFFKI LLGDFDQRLR IPPKFMKHIS EETSETVILE GPDGINWSVG  60
LEKTIDGTFL SIGWSSFIKG HDLKEHDFLV FEYDGDMHFS VLLFDTTACE KEEQIKAKAD  120
VSEMSEVKRK RGRPAKRSLN FDLPPKEEIK GELDKLPTTG DCVPSPTASQ SAKIESEDVE  180
IKISPSMSVA ECKDLEQRFG EAEKAANSFS SEYPSFVAKM TVTNICRSYT LRIPASFWRE  240
HLPTRKMEMV LRDPSGKAWI VKFLPGSKGS LKNLISAGWT AFVRGNELKV GDFCVFELVG  300
PVEFHVHIFR AEENTTSENL K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1515RSRSRRRRRPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6612731e-178KM661273.1 Ananas bracteatus clone 42897 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099945.10.0B3 domain-containing protein Os01g0723500-like
TrEMBLA0A199USR90.0A0A199USR9_ANACO; B3 domain-containing protein
STRINGXP_008810645.19e-92(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-30B3 family protein