PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco000347.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

ERF

Protein Properties

Length: 149aa MW: 15689.9 Da PI: 11.7818

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco000347.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.3	4.6e-19	54	103	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp r r++lg+f+taeeAa ++ a+++l+g Aco000347.1 54 KFRGVRRRP-WGKYAAEIRDPA----RgVRVWLGTFDTAEEAAMVYDSAALQLRG 103 89*****.******82....36***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.3E-30	53	111	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.196	54	111	IPR001471	AP2/ERF domain
SMART	SM00380	7.5E-34	54	117	IPR001471	AP2/ERF domain
Pfam	PF00847	1.1E-12	54	103	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-22	54	111	IPR016177	DNA-binding domain
CDD	cd00018	1.41E-26	54	110	No hit	No description
PRINTS	PR00367	1.5E-10	55	66	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-10	77	93	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MMESSRTFLV PILRTEHVEV TTKPAVAHRR GRRPGARKKT AAAAQTGAGA GDRKFRGVRR 60 RPWGKYAAEI RDPARGVRVW LGTFDTAEEA AMVYDSAALQ LRGPRAATNF SSPAAAAAAP 120 PPEKAPAPEK KAQAPPQGGD RGLAPAAK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-22	53	110	4	62	ATERF1
3gcc_A	2e-22	53	110	4	62	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinins. {ECO:0000269\|PubMed:16832061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020100308.1	1e-71	ethylene-responsive transcription factor CRF2-like, partial
Swissprot	Q9SUQ2	2e-28	CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBL	A0A199VZZ0	1e-37	A0A199VZZ0_ANACO; Ethylene-responsive transcription factor CRF4
STRING	XP_004511530.1	8e-32	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1690	36	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11140.1	7e-30	cytokinin response factor 1

Link Out ? help Back to Top
Phytozome	Aco000347.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ckurshumova W,Berleth T Overcoming recalcitrance - Auxin response factor functions in plant regeneration. Plant Signal Behav, 2015. 10(7): p. e993293 [PMID:26098229] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Jeon J,Cho C,Lee MR,Van Binh N,Kim J CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis. Plant Cell, 2016. 28(8): p. 1828-43 [PMID:27432872]