PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn391061
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 120aa    MW: 13503.9 Da    PI: 4.8539
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn391061genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.93.7e-0942104148
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..............t 48 
                 k+Y++Y+++ GF +r+++s+k  +r++ +t+  fvC kegk  ++ +k               
  Achn391061  42 KYYEDYGRQNGFWIRTRTSSKGqNRSNDVTSVLFVCAKEGKYVPKAEKdgvegnderveddkV 104
                 69************99888776477888*************9999988788887776555442 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.3E-742112IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MEESFGLDDF EMEDLQTPND NVKRLEAPSN GMSFGTIEEA QKYYEDYGRQ NGFWIRTRTS  60
SKGQNRSNDV TSVLFVCAKE GKYVPKAEKD GVEGNDERVE DDKVLSKRRK KSCSTAKCG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219733.23e-29PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2R6R5G62e-47A0A2R6R5G6_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGEMJ101652e-27(Prunus persica)
STRINGXP_004289266.12e-27(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.14e-07FAR1-related sequence 10