PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn389021
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 713aa    MW: 80239.1 Da    PI: 6.213
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn389021genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.3e-135896691895
                 --HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
          B3  18 lpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                 +  k ae+h  +++ + ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fv+angL+egDf+v++  ++ ++++++++
  Achn389021 589 ICQKEAETHlpELEARDGIPIAMEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDaKCGKYLIR 669
                 67788999999888889999*****7777*******99777777777777.********************..44488888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.3E-6580674IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-15589667IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-18589678IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-9590668IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MNFTLCPNNA SLLRMTEGTE TAKARLLDDR ESERGERVFI LTSDWYCHKM KGEENQEIWL  60
EREEQEQELL DVNEASIFYN DFPPLPDFPC MSSSSSSSSA PAPTKPIASS SSASSASSSS  120
SSASSWAVLK SDAEEYVEKK GSHNNNNRLA PPVAALSSDT SMEVLQPQQS DGGGGDADCM  180
DVMETFGYME LIDSNEIWDP SSIFQTENPQ PPQEPYHQNV DQFMFDESHE IPDREQNKPP  240
TDELGVLFFE WLKSNKEYIS AEDMRSIKLR RATVECASKR LGSTKEGRKQ LLKLILEWVE  300
QYQLQKKQRL AESNPPFPPP YQEPPFQNPN PNPLPPNINP CFMPSPWVPP PPPPYDPAAT  360
VMAGPPAFYG DQYTSGVSIP IPNYPASMEY NMMDSSQTWP PQYAMAAQYN QFPENHNNSN  420
NNNNSIPMVT PLSQAFVGYG NQYPYYQRSG EKMVKLGSSA TKEARKKRMA RQRRFLSHHR  480
HHHHHHNHNQ NHQHQNQNQN ADHQHPGLGG ENCSNTGLSN SANWVYWPNA AAPACSNVAA  540
EALQQPPLVQ SQNYQQQPQR QVSSDSKVIS LDRQRQGIKI ATEIEHEFIC QKEAETHLPE  600
LEARDGIPIA MEDIGTSQVW NMRYRFWPNN KSRMYLLENT GDFVRANGLQ EGDFIVIYSD  660
AKCGKYLIRG VKVRQPGPKS EIKKPSKSHK NTRTASPSAA SGSSPQPSHR VK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-2859167224105B3 domain-containing transcription factor FUS3
6j9b_D6e-2859167224105B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028120743.10.0B3 domain-containing transcription factor ABI3
TrEMBLA0A2R6QSK70.0A0A2R6QSK7_ACTCH; B3 domain-containing transcription factor
STRINGcassava4.1_025302m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.15e-57B3 family protein