PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn384641
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 413aa    MW: 45873.6 Da    PI: 9.0038
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn384641genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-181097194
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                ffk +   ++ +s rl++p  fa++  g     + t  l++ +g+ W+v++  +k ++  ++t+GW+ Fv++n ++ gDf+vF ++g+  f ++v
  Achn384641 10 FFKFF--QSSKSSERLRIPLAFAAHVkG-G--IPDTAFLRSCNGELWQVEV--TKDRNDLFFTNGWETFVEDNSVELGDFLVFDYIGNWVFDFKV 97
                77888..77777889********77754.4..4568***************..*********************************987774444 PP
2B340.45.2e-131872641189
                 HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
          B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                  +++ l +p + +++h++k   ++tl+l +e+gr+W+ k+  +k ++  + ++GW+ F+k n+++  D ++ ++++   +
  Achn384641 187 KRQNELHVPADVIKDHKLK--LPQTLILLNEEGRKWSAKVVGWKDGRIWLAGGGWRAFCKWNDVQWEDRCICEFMQGkGR 264
                 4668899*********999..8889***************99***9999999****************999997765233 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-225103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-226103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.2538101IPR003340B3 DNA binding domain
CDDcd100176.03E-17898No hitNo description
SMARTSM010194.8E-1510101IPR003340B3 DNA binding domain
PfamPF023621.4E-161092IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-17173275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-18174274IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.307177277IPR003340B3 DNA binding domain
CDDcd100171.66E-9178275No hitNo description
SMARTSM010191.4E-6180277IPR003340B3 DNA binding domain
PfamPF023621.1E-10187267IPR003340B3 DNA binding domain
HamapMF_0039612.848375409IPR012595PetM of cytochrome b6/f complex subunit 7
SuperFamilySSF1034416.54E-11377409No hitNo description
PfamPF080413.2E-10378405IPR012595PetM of cytochrome b6/f complex subunit 7
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009512Cellular Componentcytochrome b6f complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSNMKDNPGF FKFFQSSKSS ERLRIPLAFA AHVKGGIPDT AFLRSCNGEL WQVEVTKDRN  60
DLFFTNGWET FVEDNSVELG DFLVFDYIGN WVFDFKVLGR TGCNKDVVEE KDEEYKEGEG  120
EGEEELEANA LIKKREKGRG TNNLLDSGGY KGKAIANAEI EEDEDVFKSG IVSRPKNPYF  180
VAKLRKKRQN ELHVPADVIK DHKLKLPQTL ILLNEEGRKW SAKVVGWKDG RIWLAGGGWR  240
AFCKWNDVQW EDRCICEFMQ GKGRQGLYLK MHILKAGSWL WAKLHAMATV VLSPATFSVT  300
TPTAGPARSI QRTKPNVTYI GGASSLSGLE AHNCVAALGR PVRSQQGSAR FVGSLRLPFM  360
GKGRRRGGVM AAKCSAAEEI FRIAAIMNGL VLVGVAVGFV LLRIEAFVEE AE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6Q5M40.0A0A2R6Q5M4_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-15B3 family protein