PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn375771
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 470aa    MW: 52835.7 Da    PI: 7.1326
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn375771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444e-147683499
                SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                ++++led +g++W v+l  +k+ g+  +++GW  F +++gL++gDf +F+++  s f  vv+++ k
  Achn375771  7 QKIQLEDARGERWMVTL--SKCNGSLAFEEGWHAFSHEHGLEVGDFTLFHYIMGSHF--VVQIYGK 68
                689**************..99999**************************9977888..9999866 PP
2B339.21.2e-124014642994
                 -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
          B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                   ++++ ++l+d+ +r W v +  + k g  vlt+GW  Fvkan ++ gD +vFk++++ ++  ++v
  Achn375771 401 RMQRKVVVILRDPVSRLWPVIY--QEKYGLKVLTSGWAAFVKANSIQPGDECVFKVENEfECI-YRV 464
                 45577889**************..9999999************************76654433.445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.39E-13166No hitNo description
PROSITE profilePS5086312.872169IPR003340B3 DNA binding domain
SMARTSM010190.076169IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-15471IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-11668IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-15671IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.11356465IPR003340B3 DNA binding domain
CDDcd100172.89E-10400453No hitNo description
SuperFamilySSF1019365.49E-12401458IPR015300DNA-binding pseudobarrel domain
PfamPF023628.3E-10403464IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-11403458IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.884408469IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MLHLIDQKIQ LEDARGERWM VTLSKCNGSL AFEEGWHAFS HEHGLEVGDF TLFHYIMGSH  60
FVVQIYGKNG CERLIFSDEN ISRKKRRTNR KCSAKAGRHL SIDSDSMNKQ GSTTSAVSGS  120
NVEISRSQPM ATDNALNIAN DNERLQHPSR TIYTEEPFYM IDGDARNRQE DHRNSLYDLS  180
YFEIKRTSGV HETNRVLEHE MSPCHGNKTP KSQAGLDIVD KVPVTEEVVS SLRLPDVPNM  240
TTLGRNEDSQ TIENVMPISQ KISDNGNSLR QEQTKKKQTS NDQALISQKE DNLLKHSSQS  300
ARPKCGGVPK FSGLLASVRT QNCQSGSYPE IKEFGQSCNY DKAKVCKVVK TEPVDTFELS  360
PTDAVNISFL MAPDEQAFVS LMEVQELPTC LASVSFKGGL RMQRKVVVIL RDPVSRLWPV  420
IYQEKYGLKV LTSGWAAFVK ANSIQPGDEC VFKVENEFEC IYRVDIVRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122685.11e-154uncharacterized protein LOC114319826
TrEMBLA0A2R6QGI60.0A0A2R6QGI6_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.14e-07B3 family protein