PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn372791
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 307aa    MW: 34984.2 Da    PI: 7.1541
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn372791genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-131592790
                .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3  7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                ps   ++   ++pk+f + h ++k  + t++l des ++++vk+ ++k++    l++GW++F+ a++L e+D++vF+l+++ +f
  Achn372791 15 PSAFKTTTKKSFPKQFSDLH-LPK-HDYTVILVDESDEQYKVKYLVEKNG----LSAGWRGFAIAHKLLERDVLVFQLVHQCKF 92
                455556677899****9777.443.568****************777777....***********************9997666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.7569106IPR003340B3 DNA binding domain
CDDcd100177.76E-14987No hitNo description
Gene3DG3DSA:2.40.330.101.4E-121392IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-111592IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-141892IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-1018104IPR003340B3 DNA binding domain
PfamPF052666.6E-9185295IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKPLEAKKKL FRKKPSAFKT TTKKSFPKQF SDLHLPKHDY TVILVDESDE QYKVKYLVEK  60
NGLSAGWRGF AIAHKLLERD VLVFQLVHQC KFKENGMVTL STVAEQSGND IDEFGSEVLE  120
GIRFSESSVD FKDINSIENF TILVHGLVID SEIPPHLQSK YYDLCCSQNA FLHDRLLDGL  180
NCKLAAGIIC ETVNIADAIR ASKLTTSRDN FTTWDNTLKA FEKLGMNVGF LCARLNRLVS  240
FAFDLERVLE SKRLERVQTE EEIRTLEAKL LRVKESMKNL DEEIDGLKGK NKTLEVKFRE  300
EANAPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083677.11e-114B3 domain-containing protein Os01g0234100-like
TrEMBLA0A2R6R1S71e-167A0A2R6R1S7_ACTCH; B3 domain-containing protein
STRINGVIT_03s0063g00630.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-20B3 family protein