PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn364571
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 353aa    MW: 38120.1 Da    PI: 7.9367
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn364571genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17258291134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Achn364571 258 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 291
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-16252302IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385252288IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-14256289IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.65E-15256315No hitNo description
CDDcd002023.60E-13257304No hitNo description
PROSITE patternPS003440258283IPR000679Zinc finger, GATA-type
PfamPF003202.4E-15258291IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MLRVHVCIRY VYGEIVNRRE CAGGGSGEGC GTRERESERK MMGSDFMDEI DCGSFFDHID  60
DLIDFPADNG CGLGSGGCAD FPSIWAKPPA ALPGSDPILS NNYSASDLSA ELSIPYEDIV  120
QLEWLSNFVE DSFSGGGMTL EKGNTSITKA LSHNHFHTSS PVSVLESSSS STSSSGGKKM  180
LPVSPTQRGP HRARSKRPRP AAFNPRPAIQ LASPTSSESE NFAESHPVNK KKKMKVLLPP  240
VRVEANPNPN PSQGVRKCMH CEITKTPQWR AGPMGPKTLC NACGVRYKSG RLFPEYRPAA  300
SPTFVPALHS NSHKKVLEMR TMTGDSTSAI ANTAEPELIP NKNPFTGLHL MD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195199KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109479.11e-142GATA transcription factor 8-like
RefseqXP_028109480.11e-142GATA transcription factor 8-like
TrEMBLA0A2R6PLQ00.0A0A2R6PLQ0_ACTCH; GATA transcription factor
STRINGXP_009760862.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-41GATA family protein