PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn363401
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WOX
Protein Properties Length: 372aa    MW: 42185 Da    PI: 9.1503
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn363401genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.3e-2189148357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 +R+++t+eql++L+el+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Achn363401  89 SRWNPTPEQLHTLKELYRRgTRTPSADQIQHITSHLrrygKIEGKNVFYWFQNHKARERQ 148
                 7*****************99**************************************97 PP
2Wus_type_Homeobox113.79e-3788150365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ L+ely++G+rtP++++iq+it++L++yGkie+kNVfyWFQN+kaRerqk+
         Achn363401  88 SSRWNPTPEQLHTLKELYRRGTRTPSADQIQHITSHLRRYGKIEGKNVFYWFQNHKARERQKR 150
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.47984149IPR001356Homeobox domain
SMARTSM003895.2E-586153IPR001356Homeobox domain
SuperFamilySSF466892.78E-1189150IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-889148IPR009057Homeodomain-like
PfamPF000461.6E-1889148IPR001356Homeobox domain
CDDcd000867.38E-590150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MRMMGYNDGA ERELNLPDSF NVGRKLRPLV PRPPVTTTIP TLNSNAPCFS RNIHGTTHDL  60
LAFNLHLATM AEKSKREFNS TTQQVVMSSR WNPTPEQLHT LKELYRRGTR TPSADQIQHI  120
TSHLRRYGKI EGKNVFYWFQ NHKARERQKR RRKNGAPPSQ SQDNDQQHYP DNERKESGTG  180
TGTVANRTPN FEVGWALPRN CTTTLAEKTS SIQSGPPPAA AAELTTEGWL HFDEGEIFHQ  240
RRNATWHQHM MHLSSSSLPT HHLINTCTAA ATTSSTSTIA NSTSSNTSQT LTTTMDQPKL  300
MIKASQDLNY FFRKNLNCSF SNHYADEEVY GAPDQTLQLF PLRSSGDCDE REKMNTNFTP  360
EQFFEFLPLK N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021643764.12e-98WUSCHEL-related homeobox 1-like
TrEMBLA0A2R6PCM00.0A0A2R6PCM0_ACTCH; WUSCHEL-related homeobox like
STRINGEOY212983e-93(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-39WUSCHEL related homeobox 1