PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn362941
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 234aa    MW: 25570.8 Da    PI: 9.8828
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn362941genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-201868256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr ++ +gr++AeIrdp   g++ r++lg+f+taeeAa+a++aa+++++g+
  Achn362941 18 HYRGVRKRP-WGRYAAEIRDP---GRKSRVWLGTFDTAEEAARAYDAAAREFRGA 68
                69*******.**********8...556*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-221876IPR016177DNA-binding domain
PROSITE profilePS5103224.4741875IPR001471AP2/ERF domain
SMARTSM003802.2E-391881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-331876IPR001471AP2/ERF domain
CDDcd000182.37E-181875No hitNo description
PfamPF008472.4E-141867IPR001471AP2/ERF domain
PRINTSPR003671.5E-111930IPR001471AP2/ERF domain
PRINTSPR003671.5E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAPKAAATAV KGIVKEMHYR GVRKRPWGRY AAEIRDPGRK SRVWLGTFDT AEEAARAYDA  60
AAREFRGAKA KLNFPLLDEN VSNGYDFKTK IEIKKSHCNQ SPSPSSTVES SSPVASSPPP  120
LDLSLSFGGG ARFPLQQYPF ASPVTGVMPL ANHVFNFDSI IRSARMNQDY LRDQRMRMDH  180
VSHVKAVTAV DFRGGGGAQS DSDSSSVIDL NLSDVKTRRA IDLDLNLAPP PEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-221476164ATERF1
3gcc_A2e-221476164ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8698580.0GQ869858.1 Actinidia deliciosa ethylene response factor 7 (ERF7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028101608.12e-70ethylene-responsive transcription factor 4-like
TrEMBLA0A2R6QA731e-168A0A2R6QA73_ACTCH; Ethylene-responsive transcription factor 4 like
STRINGVIT_10s0003g00140.t012e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-23erf domain protein 9