PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn360641
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 329aa    MW: 36601.8 Da    PI: 9.3364
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn360641genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.22.9e-1564151186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ +++   + +qCk++++ ++k+yk ++     +  +  s++p+f++l+
  Achn360641  64 CWSEGATSVLIDAWGERYMELSRGNLKQKHWKEVADIVsSREDYTKhpkTDIQCKNRIDTVKKKYKVENSKIAAG--GGPSKWPFFERLD 151
                 7*************************************855556551116679***************9999987..67779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-2662153No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEDDEEIQSH QSPDTGSPVS PPNGRITVTV AAAPPQNNTL TLALPIQQPR PAGNGGGGGG  60
REDCWSEGAT SVLIDAWGER YMELSRGNLK QKHWKEVADI VSSREDYTKH PKTDIQCKNR  120
IDTVKKKYKV ENSKIAAGGG PSKWPFFERL DHLIGPTAKT AGGSTSTPSL PSGGHKQLRR  180
QAPIDSDSSG SESEPPTPDS IDSFPPETYV PKRPRMQREM NLSAVRPVMN QRSKDRAERD  240
KNWGNSVREL TRAILKFGEA YEQAESSKLQ QLVEMEKQRM KFAKELELQR MQFFMKTQLE  300
LSQLKHRRAG NSNHHNNNIN NNNSDCSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106784.11e-153trihelix transcription factor ASIL2
SwissprotQ9LJG81e-64ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2R6R0I60.0A0A2R6R0I6_ACTCH; Trihelix transcription factor
STRINGVIT_09s0002g00720.t011e-146(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103321823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-60sequence-specific DNA binding transcription factors