PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn357091

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Dof

Protein Properties

Length: 309aa MW: 33423.3 Da PI: 8.5548

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn357091	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.4e-39	45	102	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ Achn357091 45 QENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKT 102 7889****************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.2E-33	46	102	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-25	48	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.506	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MIQELLGETT SLIGGERKIS LSNILEASSP SPSPSPSPSP SSSAQENLRC PRCDSSNTKF 60 CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKN KTGGTTLTPP PPSSLGGKPN 120 SSGMFNKAFH CSEVEKSGLT QSPILWAPPQ NSHILALLRA NQNPNPNPNL DMVTPNPVSV 180 KEECFLSSGT RELGLGLDPF YQMNPMWRGN LQQVQQQNGF LLGEVQNTGV QDLYHRLRSS 240 SAAGYYNNPQ DHSSLPVLLS NNIVASSSTS TNLESAPVAA SGELGYWNPT LSWSDHHLPS 300 TANGTAYR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM084363	5e-57	AM084363.1 Hordeum vulgare subsp. vulgare partial dof15 gene for dof zinc finger protein 15.
GenBank	KP662911	5e-57	KP662911.1 Cajanus cajan Dof7 (Dof7) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018826400.1	1e-81	PREDICTED: dof zinc finger protein DOF5.3-like
TrEMBL	A0A2R6PAI9	0.0	A0A2R6PAI9_ACTCH; Dof zinc finger protein like
STRING	POPTR_0007s11620.1	4e-80	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	7e-33	DOF zinc finger protein 1