PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn355491
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 373aa    MW: 40912.5 Da    PI: 6.5711
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn355491genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17266300135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Achn355491 266 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 300
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.9E-17260310IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385260296IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-15262324No hitNo description
Gene3DG3DSA:3.30.50.103.1E-14264298IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.08E-14265312No hitNo description
PfamPF003201.4E-15266300IPR000679Zinc finger, GATA-type
PROSITE patternPS003440266291IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MLLCLSKELS MEMGSTTPSL SLSALAILTV SSPKNSTISM ETPEFFQAGY YKTQLTPEKR  60
FSDSKSGAGD HFSVEDLLEF PNDDVADGNF DGEGPVVDSC NSSFSGGEPH FPAEMGCRSF  120
VGDQFSGDLC VPYDDLAELE WLSNFVEESF SSEDPQKLKL ISGMTSRADE GSETRGSNPD  180
STRNNSAFRP EVSVPGKARS KRSRAVPGNW ASRLLALSPI PTAPPPSSEH HEVALSSGKK  240
TVRVAPKKRE GGENSSARTG GDERKCLHCA TDKTPQWRTG PMGPKTLCNA CGVRYKSGRL  300
VPEYRPAASP TFMLTKHSNS HRKVMELRRQ KEFQRTHHPH QQFYHEDMNF DGSNADNYLI  360
HQHIGSDFGQ LI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028071764.11e-160GATA transcription factor 12-like
SwissprotP697817e-87GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2R6QZM70.0A0A2R6QZM7_ACTCH; GATA transcription factor
STRINGXP_010249552.11e-156(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-89GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]