PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn354411
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 217aa    MW: 24231.5 Da    PI: 8.3633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn354411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.2e-114595254
                HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                +  h e+Er+RR++  + f+ Lr+llP       ++K s  +   +A +YIk+L
  Achn354411 45 KIVHREIERQRRKQQATLFASLRSLLPIeY---IKGKRSITDQISEAARYIKHL 95
                678*************************77...********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.59E-841100No hitNo description
SuperFamilySSF474596.41E-1242111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.5824395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-74595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-745110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.005949101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGEIAVLESQ DLTNNTAQTQ NQNQYIVDVT PACSDPSAND NVNKKIVHRE IERQRRKQQA  60
TLFASLRSLL PIEYIKGKRS ITDQISEAAR YIKHLNKNIK EMNAKREKLK WLSSSSSLNN  120
NIGNSKTCSK KYCFTISQSM GQVEVTFSSG FDNENLQLSR VLELLIEEGL DVVSCVSTKV  180
DGSLLHAIQS KVNDLTCFNV SSLKEKLGNY CHDSLI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359467.12e-54transcription factor bHLH118-like
TrEMBLA0A061FZP83e-51A0A061FZP8_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY230205e-52(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.18e-31bHLH family protein