PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn350081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 236aa MW: 25735.3 Da PI: 7.3922 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.8e-05 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H Achn350081 84 FECHYCRRNFPTSQALGGHQNAH 106 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.23E-6 | 80 | 112 | No hit | No description |
Pfam | PF13912 | 7.8E-6 | 84 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.323 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MKYDYSNSSL MDNLERETHD FMNVESFSQL PFIRPPPAKE NPPAAAAIRL FGIEFGGGGG 60 AAATDHDSDS SSKDGGDSGG GRKFECHYCR RNFPTSQALG GHQNAHKRER QHAKRAHLHS 120 AAAAYHRPLP YYSWAPAGGN VNIYDNVPRF YGGDYVRNSS YSFPATINGS PMGLWQNIPT 180 VQSSGAVFNC DRSMYNHHSF PLFSSGELKP SGSQSLFGCE ANATVQDHVS LDLRL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957971 | 7e-31 | EU957971.1 Zea mays clone 1638742 zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459255.1 | 2e-65 | zinc finger protein 8 | ||||
TrEMBL | A0A2R6QRN8 | 1e-166 | A0A2R6QRN8_ACTCH; Zinc finger protein like | ||||
STRING | POPTR_0006s20970.1 | 3e-65 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1473 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58070.1 | 9e-27 | C2H2 family protein |