PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn344551 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | G2-like | ||||||||
Protein Properties | Length: 188aa MW: 21533.9 Da PI: 6.5184 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.1 | 8e-28 | 82 | 135 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prl Wtp LH++Fv+a+e+LGG++kAtPk il+lm+vk L+++hvkSHLQ Rl Achn344551 82 PRLWWTPHLHHSFVHAIEKLGGQDKATPKLILQLMDVKELSIAHVKSHLQEKRL 135 8*************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-26 | 78 | 137 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-21 | 82 | 136 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.36E-13 | 82 | 138 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSEGMEIQDD KKKERNEEQH ENGSSSVSSQ KFSSFDLNEE ANNSEDDDCN KKEDLANGNR 60 TTLREGNERK TTTRQYVRSN MPRLWWTPHL HHSFVHAIEK LGGQDKATPK LILQLMDVKE 120 LSIAHVKSHL QEKRLKHEER LLDLKLRLSE SVGNNEERPT YGNNMQEINT VLSLSLSPYS 180 SSQTSKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-13 | 83 | 134 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-13 | 83 | 134 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-13 | 83 | 134 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-13 | 83 | 134 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-13 | 83 | 134 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-13 | 83 | 134 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-13 | 83 | 134 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-13 | 83 | 134 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-13 | 83 | 134 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-13 | 83 | 134 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-13 | 83 | 134 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-13 | 83 | 134 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028107181.1 | 3e-49 | two-component response regulator ARR12-like | ||||
TrEMBL | A0A2R6PY37 | 1e-78 | A0A2R6PY37_ACTCH; Myb family transcription factor | ||||
STRING | POPTR_0011s07270.1 | 5e-43 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5433 | 22 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42660.1 | 1e-27 | G2-like family protein |