PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn337841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 497aa MW: 56295.3 Da PI: 4.4092 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 144.8 | 8.3e-45 | 129 | 495 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lL +c ea++s++++l++ +L rl+e a p+g++ qRl+ y+ + L + ++e++ ++ aa+++f+++ P+ +f+h++aN+ Achn337841 129 HLLNACGEAMESQNTHLVEVILRRLEEKACPRGSAAQRLVYYLIQSLDEDFDY---------LMQEAR----KNYEAAFRAFYQILPYGRFAHFVANSS 214 89**********************************************99987.........223332....345578999****************** PP GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 Ileav ++ e + i+Dfd+++G+QWp+L++aL ++ +g +++i v+ ++ + s ++ e+t+erL + A++ gv++e + ++ l + ++ ++ Achn337841 215 ILEAVPEDaEIIRIVDFDMGEGVQWPPLIEALGNQHRGVRQIQIVSVKIHDFNsmpSFQNFEKTKERLCEHASSSGVQLEVGEVDMEGLVSEMKKMENC 313 *****8885888*********************************99885555779999***********************98444444333344467 PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvks.l.........sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerik 284 ++E+la n+++ l ++ +++ s + +e+Lk+ ++ + + v+++ + + + F f l +al++s+e +++++ e+ri Achn337841 314 GRREMLAFNCMVGLPHMGRHRSSR--HVEEFLKIAQEsIglrnwngfrNNGVITFGDGQTMSDYRGFGSFFEAQLGRATALLESMEGQISSHLkEARIA 410 77***************9444443..34777777654212232233334568899999999999*********************99988776589999 PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerle.eaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsvSaW 373 +E ++++ ++++ + e+ e + Wr +l + G+ + ++s +++++ak l+r+ + y + e ++++vl+ + pLv vS W Achn337841 411 MECLFVAPYVSSLACFENPE-------ERDWRGMLPpKIGLDAWKMSRDTVAEAKELVREGD-SLYWIGTEgeiENQVVLCFLGTPLVRVSTW 495 99999999999988888887.......589*****736**********************99.458888554559****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 24.828 | 101 | 474 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-42 | 129 | 495 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MEMMHPPSWS YSSLDEVGFH VLDMDSDSAN FGSSSSFFSP PMYYESQRFQ NLEESTSSEK 60 QSFDEVEGFL NWMEIENGNP SSLCTTEETE SSSPSMPSRE ASIDVSSLEK PLVFPREDME 120 LDYELSIPHL LNACGEAMES QNTHLVEVIL RRLEEKACPR GSAAQRLVYY LIQSLDEDFD 180 YLMQEARKNY EAAFRAFYQI LPYGRFAHFV ANSSILEAVP EDAEIIRIVD FDMGEGVQWP 240 PLIEALGNQH RGVRQIQIVS VKIHDFNSMP SFQNFEKTKE RLCEHASSSG VQLEVGEVDM 300 EGLVSEMKKM ENCGRREMLA FNCMVGLPHM GRHRSSRHVE EFLKIAQESI GLRNWNGFRN 360 NGVITFGDGQ TMSDYRGFGS FFEAQLGRAT ALLESMEGQI SSHLKEARIA MECLFVAPYV 420 SSLACFENPE ERDWRGMLPP KIGLDAWKMS RDTVAEAKEL VREGDSLYWI GTEGEIENQV 480 VLCFLGTPLV RVSTWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-12 | 134 | 324 | 26 | 220 | Protein SCARECROW |
5b3h_A | 4e-12 | 134 | 324 | 25 | 219 | Protein SCARECROW |
5b3h_D | 4e-12 | 134 | 324 | 25 | 219 | Protein SCARECROW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028108393.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A2R6PPY4 | 0.0 | A0A2R6PPY4_ACTCH; Nodulation-signaling pathway 2 protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07520.1 | 6e-17 | GRAS family protein |