PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn329601
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 264aa    MW: 26612.6 Da    PI: 9.5957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn329601genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.1e-0784110531
                 HHHHHHHHHHHHHHHHHHHHCTSCCC. CS
         HLH   5 hnerErrRRdriNsafeeLrellPkas 31 
                 h+++Er RR+ri +++  L+el+P+a 
  Achn329601  84 HSIAERLRRERIAERMKALQELVPNAN 110
                 99***********************73 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-777114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-577118No hitNo description
PROSITE profilePS508889.90279128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-781113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-484110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MHSSFNVKFK GYLTLISSTT SDNSRLGGGG DGGDISSFKS TSINYGGPTA VLNQAPAASG  60
SGGGGPSQPR QRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPNAN KVLSMSRLGG  120
AAAVAPLVAD TSSEGGGDCI QASGGLRGGN GTQTASTSNA SNDGMTVTEH QVAKLMEEDM  180
GSAMHYLQGK GLCLMPISLA NAISTATCHS RNPLASAVHH HPLADGGGPS SPNMSVLTVQ  240
SATAGKGGAD SSSVKDAASV SKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656597.11e-104PREDICTED: transcription factor UNE12 isoform X2
SwissprotQ9ZUG92e-70BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A2R6QS311e-136A0A2R6QS31_ACTCH; Transcription factor bHLH66 like
STRINGVIT_11s0037g00040.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.17e-49LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]