PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn329191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | WRKY | ||||||||
Protein Properties | Length: 320aa MW: 35433.9 Da PI: 7.7333 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.9 | 1.2e-29 | 163 | 222 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+ Achn329191 163 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApTCPVKKKVQRSVEDQSILVATYEGEHNHP 222 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.808 | 158 | 224 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.6E-29 | 159 | 224 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-25 | 161 | 224 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-33 | 163 | 223 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-24 | 164 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MAYLSLVDTS LDLNANPLSL VDEVPMKEVK SNFIEFGRRM SVKEETSALE EELNRVSEEN 60 KKLTETLTVL CENYTALRSH LMDYMNKNPV AEDRKRKAES MAATPNMMLN NNMGGNLSGG 120 NNSESSSSDE DSSCKRPREE HVKAKISRVC VRTEASDTSS LLVKDGYQWR KYGQKVTRDN 180 PCPRAYFKCS FAPTCPVKKK VQRSVEDQSI LVATYEGEHN HPHPSRQEVV ASSSRCVTLA 240 SAPCPPSLSS SGPTITFDLT KPKPNTETKT PSPPINSPQF QQFLVEQMAS SLTKDSGFKA 300 ALAAAISGRF LQHDQTEKW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-20 | 147 | 224 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ820201 | 8e-90 | JQ820201.1 Camellia sinensis WRKY transcription factor 40 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028127360.1 | 1e-145 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 2e-90 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A2R6PD84 | 0.0 | A0A2R6PD84_ACTCH; WRKY transcription factor 40 | ||||
STRING | cassava4.1_011696m | 1e-131 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2855 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 7e-83 | WRKY DNA-binding protein 40 |