PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn322541

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

CPP

Protein Properties

Length: 971aa MW: 105810 Da PI: 5.6282

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn322541	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.9	5.4e-15	587	625	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkks+Clk+YC+Cfaag +C e+C C++C N+ e Achn322541 587 CKSCNCKKSRCLKLYCDCFAAGLYCVESCACQECLNRPE 625 79**********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.8E-12	585	626	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	18.601	586	681	IPR005172	CRC domain
Pfam	PF03638	5.5E-11	588	623	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence Send to blast
MLKEYSMVWI SSSGIPENDN NTSTTTINSQ SDSVAIQDSA IFGDISNLSP VKPLKDAPVV 60 SGFLELSSPP SVFTSPHPNT LHRTTYLKRL QCSRLSREES SQQCFIGEEI AVSSNQFEKS 120 NIHDSSAFIL FNCIEKECSN NGSVQDQTAN PSGHIDECLA DAVKVDCANS THSASLGLIQ 180 SDDIPQSLTT CPDSIEMIPE RDGKNNTGQV EEKALDAFRP TTELTGQDFD GQPSFHNNPI 240 ETDTKHGVGE MRRSVGTKDE SDLSVYHAFE KEQCEIVVAQ HAGAAHKEEL DCASQLLQSI 300 QGYEDCTETI GESSNNPIEN MILHCPKGQQ DRGMHRRCLR FEDAQSHTMA SRPDSWSPSN 360 IVSSSKIPTI SADTEVSESS CAEVREITTG GQQINVNLPI TTISPRNIGS SRSTVPKPSG 420 IGLHLNSITN AMPNGCGACR SMKSAEKGYQ NLEGRKLISI MGCHPPENTK KTLILPSARE 480 RGSTSSEDGS YETQSSVPVN SLASLSPQPA SDPPLLKQSN YQTTPRDKRK STSRHADAVE 540 ELNTSSPQKK RQSYMFHHLI ESFNASQCLY LMDIVKKASA ANDGDGCKSC NCKKSRCLKL 600 YCDCFAAGLY CVESCACQEC LNRPEYEDTV LDTRQQIESR NPLAFVPKIT KRFLDSPANS 660 NGANVGCSNG CRCEGCKNVY GRKEEYGMAK DVLDEGLKSP FDEEMETVAS RDALLQTELC 720 NPHNWTPLTP SFQFSDHAKD ASNSRFSSRR CLPSPESNLT FLPSFGESPC HAMLIKARKG 780 IEDIVASHQE LDCSNIEPVS GFSTRYDGLA SVCDLSTLPN PSSTAMGSSA SFEQSDWTTN 840 SRAQFCPGSG HLSSASSLRW RGTPITPAAK FGGTKILQAV ESDEKVHYIL EDDMPDILKD 900 KPTPLNGVKV SSPNKKRISP PRRSSCSTDL TSGRKFILQA MPSFPPLTPC IDSKDSTQNI 960 NGPQDFSSKK *

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence Send to blast

MLKEYSMVWI SSSGIPENDN NTSTTTINSQ SDSVAIQDSA IFGDISNLSP VKPLKDAPVV  60
SGFLELSSPP SVFTSPHPNT LHRTTYLKRL QCSRLSREES SQQCFIGEEI AVSSNQFEKS  120
NIHDSSAFIL FNCIEKECSN NGSVQDQTAN PSGHIDECLA DAVKVDCANS THSASLGLIQ  180
SDDIPQSLTT CPDSIEMIPE RDGKNNTGQV EEKALDAFRP TTELTGQDFD GQPSFHNNPI  240
ETDTKHGVGE MRRSVGTKDE SDLSVYHAFE KEQCEIVVAQ HAGAAHKEEL DCASQLLQSI  300
QGYEDCTETI GESSNNPIEN MILHCPKGQQ DRGMHRRCLR FEDAQSHTMA SRPDSWSPSN  360
IVSSSKIPTI SADTEVSESS CAEVREITTG GQQINVNLPI TTISPRNIGS SRSTVPKPSG  420
IGLHLNSITN AMPNGCGACR SMKSAEKGYQ NLEGRKLISI MGCHPPENTK KTLILPSARE  480
RGSTSSEDGS YETQSSVPVN SLASLSPQPA SDPPLLKQSN YQTTPRDKRK STSRHADAVE  540
ELNTSSPQKK RQSYMFHHLI ESFNASQCLY LMDIVKKASA ANDGDGCKSC NCKKSRCLKL  600
YCDCFAAGLY CVESCACQEC LNRPEYEDTV LDTRQQIESR NPLAFVPKIT KRFLDSPANS  660
NGANVGCSNG CRCEGCKNVY GRKEEYGMAK DVLDEGLKSP FDEEMETVAS RDALLQTELC  720
NPHNWTPLTP SFQFSDHAKD ASNSRFSSRR CLPSPESNLT FLPSFGESPC HAMLIKARKG  780
IEDIVASHQE LDCSNIEPVS GFSTRYDGLA SVCDLSTLPN PSSTAMGSSA SFEQSDWTTN  840
SRAQFCPGSG HLSSASSLRW RGTPITPAAK FGGTKILQAV ESDEKVHYIL EDDMPDILKD  900
KPTPLNGVKV SSPNKKRISP PRRSSCSTDL TSGRKFILQA MPSFPPLTPC IDSKDSTQNI  960
NGPQDFSSKK *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028118349.1	0.0	CRC domain-containing protein TSO1-like isoform X1
Refseq	XP_028118350.1	0.0	CRC domain-containing protein TSO1-like isoform X1
TrEMBL	A0A2R6QZF4	0.0	A0A2R6QZF4_ACTCH; Protein tesmin/TSO1-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6980	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-36	Tesmin/TSO1-like CXC domain-containing protein