PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn314821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 21416.4 Da PI: 7.7219 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.7 | 1.3e-40 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC ++Cv+apyf ++q p++fa+vhk+FGasn +k+l ++p ++r da+ sl+yeA ar+rdPvyG+vg+i++lqqq+ +l++ela+++ Achn314821 10 PCGACKFLRRKCLRECVFAPYFDSDQgPSHFAAVHKVFGASNASKMLLRVPAHKRLDAVVSLCYEALARVRDPVYGCVGHIFTLQQQVVNLQVELAYTQ 108 7***********************9999********************************************************************998 PP DUF260 99 ee 100 ++ Achn314821 109 AR 110 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.32 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-39 | 10 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGSNNSGAGP CGACKFLRRK CLRECVFAPY FDSDQGPSHF AAVHKVFGAS NASKMLLRVP 60 AHKRLDAVVS LCYEALARVR DPVYGCVGHI FTLQQQVVNL QVELAYTQAR LSTLQCLPLP 120 PLPQPQSPSQ ANLQFSSQMA LTSNAPTHFD ASTSMELVSF CNAMDQEFED GDLQAIAREF 180 VSRYLSGVKV QPSNSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 4 | 123 | 4 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 4 | 123 | 4 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021657345.1 | 1e-92 | LOB domain-containing protein 19-like | ||||
Swissprot | O81322 | 3e-70 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A2R6RIZ6 | 1e-143 | A0A2R6RIZ6_ACTCH; LOB domain-containing protein | ||||
STRING | EOX96194 | 9e-91 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 6e-55 | LOB domain-containing protein 31 |