PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn313101
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 619aa    MW: 68927.4 Da    PI: 7.2644
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn313101genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07154178126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC+ f++  tC+y  +C+FaH+
  Achn313101 154 FKTKLCCKFRA-RTCPYTTNCNFAHS 178
                 69*********.*************8 PP
2zf-CCCH17.76.6e-06228253126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 yk + C+ f+    C+yGd+C+F H+
  Achn313101 228 YKGRHCKKFYTEEGCPYGDNCTFLHD 253
                 77888********************7 PP
3zf-CCCH40.93.5e-13292317126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG+C++G++C+FaHg
  Achn313101 292 WKTRICNKWELTGYCPFGNKCHFAHG 317
                 8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-7151184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-13151186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.817153180IPR000571Zinc finger, CCCH-type
SMARTSM003560.17153179IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-5154178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-9226255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7226255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23227255IPR000571Zinc finger, CCCH-type
SMARTSM003560.058227254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-9288322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-16288321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441291319IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-9291318IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10292317IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.24E-21417486No hitNo description
Gene3DG3DSA:3.30.40.102.6E-18435483IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.98E-13437483No hitNo description
PfamPF136391.5E-14437480IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.843438480IPR001841Zinc finger, RING-type
SMARTSM001844.3E-6438479IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MRYEYTFMAK LAEQAHRYED MSNKKPAKPA KGLRQAREFN ASHSTHLLDG LGRKYNIGFW  60
VLLVMDYGRE VGFSSGNVVQ ILTGTQSNGF DDNWGPGSDN QAIWATEDDY RDWTRETSVE  120
TISQTRSGSE PPNKKSRNSQ SGDNRSKAIG KMFFKTKLCC KFRARTCPYT TNCNFAHSVE  180
ELRRPPPNWQ EIVAAHEEER GVSSEPREEF QIPALESSAF EGEAQRSYKG RHCKKFYTEE  240
GCPYGDNCTF LHDEQSRARE SVAISLGPGS GGGGGGTYGN NATAANLKPS NWKTRICNKW  300
ELTGYCPFGN KCHFAHGAQE LHRYGGGLME GEDRAASSAS PDRKQGAVPS KIPADTVVAS  360
MTSVPHSDGY HIGVPSQRCF MENLLYMWYF RRRSARTPVG TAGANGGQGL DPITIQSFPT  420
FPYLSVKDFR KEKYGLECAI CLSEFLDDDI LRLLTTCCHV FHQECIDLWL ESHKTCPVCR  480
RSLDTSEKSP TNYSAVHEID ENEPNEDTFS ITIKDDNDQD GVGKSDRAEN LAEQRNNAQN  540
KREKFSRSHS TGHSIVKAKG TEDKFTLRLP EHLHAKIIRG HNWTGSCTTF GEYKSKTSTG  600
NGGFGEVSDS SGGDVNKI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028118033.11e-176zinc finger CCCH domain-containing protein 12-like
TrEMBLA0A2R6PMK10.0A0A2R6PMK1_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_010240878.11e-152(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-108C3H family protein