PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn312401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24989.8 Da PI: 5.7962 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 51 | 101 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Achn312401 51 PVYRGVRKRA-WGKWVSEIREPKK---KSRIWLGTFSTPEMAARAHDVAALSIKG 101 68*****887.**********854...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-12 | 51 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 52 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.196 | 52 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-21 | 52 | 110 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.7E-35 | 52 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 53 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.41E-32 | 53 | 111 | No hit | No description |
PRINTS | PR00367 | 1.5E-10 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MTESPNSEIE SSSNSFSPPP SSPSNSSRPN PRRPKSEGPV QARPKRTSKH PVYRGVRKRA 60 WGKWVSEIRE PKKKSRIWLG TFSTPEMAAR AHDVAALSIK GKTAHLNFPD LAQLLPRPAT 120 CSARDVQAAA AKAASMDYLN PETTSSEELS EIVELPTLGA SDDSAESRNE FSLVDSMGVD 180 MDRWVYSTQW LQEDYYGYFA SDQTSMAESV ISESFETLLW QWQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 48 | 109 | 10 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028075151.1 | 7e-74 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 8e-54 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2R6R4A9 | 1e-163 | A0A2R6R4A9_ACTCH; Ethylene-responsive transcription factor TINY like | ||||
STRING | XP_010249578.1 | 8e-65 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 9e-53 | ERF family protein |
Publications ? help Back to Top | |||
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