PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn307811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 175aa MW: 19960.3 Da PI: 6.1303 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 12 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.................tWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd +l+++v+ +G g +W++Ia +++ gRt++++k++w+++l Achn307811 12 KGLWKPEEDVILKKYVETHGEGnwasvsqksggwdvpscSWSLIAGRLP-GRTDNEVKNYWNTHL 75 678**********************************************.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-20 | 5 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.006 | 7 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.01E-14 | 7 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-13 | 11 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.84E-11 | 15 | 75 | No hit | No description |
Pfam | PF13921 | 7.8E-8 | 15 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MDIKEVKPRV KKGLWKPEED VILKKYVETH GEGNWASVSQ KSGGWDVPSC SWSLIAGRLP 60 GRTDNEVKNY WNTHLNKKNS QHKTTMLGPN KKKEPQQLPP SQPICSRNSE NNNEGLHGRK 120 DEEVTIKSQQ MEDTKSFNFD VEEPSLLSAN NALFFYDDEP FMPIWDSFAF SEAF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028098262.1 | 9e-61 | transcription factor MYB82-like | ||||
TrEMBL | A0A2R6S1G5 | 1e-111 | A0A2R6S1G5_ACTCH; Transcription factor like | ||||
STRING | VIT_11s0016g05660.t01 | 8e-43 | (Vitis vinifera) | ||||
STRING | VIT_11s0016g05690.t01 | 7e-43 | (Vitis vinifera) | ||||
STRING | cassava4.1_027214m | 6e-43 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 2e-30 | myb domain protein 82 |