PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn306271
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 713aa    MW: 78326.6 Da    PI: 5.0645
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn306271genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.91.7e-821544721311
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.....svselykalppsetsekn.......sseelaalklfsev 87 
                 lv+lLl+cAeav  +d++la+ +L+++    sp gd++qR+  +f+ +L++rl+      s  ++  + + s+    +        +e++ a++l++++
  Achn306271 154 LVHLLLACAEAVGCRDTQLADLMLTQIWPSISPWGDSLQRVSYCFAMGLKSRLSLlqnlnSNGTILFTANGST----DsvnstvtREEKMEAFQLLHKT 248
                 68**************************************************986211101111222222222....1234467778899999****** PP

        GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak. 184
                 +P++ f++++aN aI +a +g++ +HiiD++ ++ lQWp+L+++LasR++gpp s+RiT++ +  +  +  l++  + L + A  lg+p+ef+v++++ 
  Achn306271 249 TPYIAFGFMAANDAITQASQGKDSLHIIDLGTQHTLQWPSLIRSLASRADGPPkSVRITAILE--NPCSLDLQSSIKGLIEEAGGLGIPLEFHVITESv 345
                 *************************************************88887********9..4499*************************95553 PP

        GRAS 185 .rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                  +   l+ e+L+++   gEal Vn++++lh+ ++es  + +   ++L+++k+l P++v+vveq+++hn++ Fl rfle+l+yysa+fdsle +lpr+s+
  Achn306271 346 vTPCLLTKEKLNINLgeGEALFVNSIMHLHKYVKESRGSLK---AILQAIKKLGPTLVTVVEQDSNHNGPFFLGRFLESLHYYSAIFDSLECSLPRNSQ 441
                 35567788888777666****************88776666...9****************************************************** PP

        GRAS 281 erikvErellgreivnvvacegaerrerhet 311
                 +r+k+E + +++ei+n++aceg++r   h +
  Achn306271 442 QRMKMEIVHFAEEIRNIIACEGSDRGTTHMR 472
                 ************************9887755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.949128517IPR005202Transcription factor GRAS
PfamPF035145.8E-80154472IPR005202Transcription factor GRAS
Gene3DG3DSA:3.40.50.7201.6E-79479637IPR016040NAD(P)-binding domain
SuperFamilySSF517354.59E-70479645IPR016040NAD(P)-binding domain
SMARTSM008461.0E-95480629IPR020828Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
PfamPF000442.6E-57481629IPR020828Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
PRINTSPR000781.9E-24588601IPR020831Glyceraldehyde/Erythrose phosphate dehydrogenase family
PRINTSPR000781.9E-24623641IPR020831Glyceraldehyde/Erythrose phosphate dehydrogenase family
PROSITE patternPS000710627634IPR020830Glyceraldehyde 3-phosphate dehydrogenase, active site
SuperFamilySSF553471.83E-29628696No hitNo description
PfamPF028005.8E-23634692IPR020829Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
Gene3DG3DSA:3.30.360.106.7E-31638696No hitNo description
PRINTSPR000781.9E-24650666IPR020831Glyceraldehyde/Erythrose phosphate dehydrogenase family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MSGFLSFPIR RFCPARVEQE QAGGGGEYSW EEATLLNEID QSPSNTTNDP LLLNSEEEEF  60
VNSFFNMDYY DEKDNHKFPE EHKAFDHFHG ELIENFSMMI EGDNELENMI STCFEDLRDV  120
DSEMLQLPAR EDDDDETHIN ISSIHGGVDQ GLQLVHLLLA CAEAVGCRDT QLADLMLTQI  180
WPSISPWGDS LQRVSYCFAM GLKSRLSLLQ NLNSNGTILF TANGSTDSVN STVTREEKME  240
AFQLLHKTTP YIAFGFMAAN DAITQASQGK DSLHIIDLGT QHTLQWPSLI RSLASRADGP  300
PKSVRITAIL ENPCSLDLQS SIKGLIEEAG GLGIPLEFHV ITESVVTPCL LTKEKLNINL  360
GEGEALFVNS IMHLHKYVKE SRGSLKAILQ AIKKLGPTLV TVVEQDSNHN GPFFLGRFLE  420
SLHYYSAIFD SLECSLPRNS QQRMKMEIVH FAEEIRNIIA CEGSDRGTTH MRESRTSGKT  480
KVGINGFGRI GRLVLRIAVS RDDIDVVAVN DPFVDAKYMA YMFKYDSTHG VFNGTIRVLD  540
EYTLEINGKE IKISSKRNPA EIPWGDYGAD YVVESSGVFT TLEKASIHKK GGAKKVVISA  600
PSADAPMFVV GVNENTYKPS MDIVSNASCT TNCLAPLAKV VHEEFGIAEG LMTTVHATTA  660
TQKAVDGPSM KDWRGGRGAG QNIIPSSTGA AKVQGQNIVP GSCGRKTPHT IV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4k9d_A1e-10147970711242Glyceraldehyde-3-phosphate dehydrogenase
4k9d_B1e-10147970711242Glyceraldehyde-3-phosphate dehydrogenase
4k9d_C1e-10147970711242Glyceraldehyde-3-phosphate dehydrogenase
4k9d_D1e-10147970711242Glyceraldehyde-3-phosphate dehydrogenase
4k9d_E1e-10147970711242Glyceraldehyde-3-phosphate dehydrogenase
4k9d_F1e-10147970711242Glyceraldehyde-3-phosphate dehydrogenase
4k9d_G1e-10147970711242Glyceraldehyde-3-phosphate dehydrogenase
4k9d_H1e-10147970711242Glyceraldehyde-3-phosphate dehydrogenase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882038.10.0DELLA protein RGL1-like
TrEMBLA0A2R6PRA90.0A0A2R6PRA9_ACTCH; DELLA protein
STRINGXP_004306565.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140671113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-48RGA-like 1