PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn303561
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 691aa    MW: 75016 Da    PI: 6.3658
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn303561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-08260280526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ GtC+ Gd C +aHg
  Achn303561 260 PCPEFRK-GTCRLGDACEYAHG 280
                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.1E-1516141IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.51E-1450138IPR020683Ankyrin repeat-containing domain
PfamPF127965.1E-954125IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.34358133IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.635883IPR002110Ankyrin repeat
SMARTSM002480.00555888IPR002110Ankyrin repeat
CDDcd002048.62E-1460138No hitNo description
PROSITE profilePS5008812.36993128IPR002110Ankyrin repeat
SMARTSM002480.001493125IPR002110Ankyrin repeat
SMARTSM003564.7E-5255281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4259282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.756260282IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5260280IPR000571Zinc finger, CCCH-type
SMARTSM0035654290313IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.625290314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MENCESKQKF ASFSVLLELC ATDDLVGFKI AVEEEGHDID EPSCWYGRRI GSNKMGFEER  60
TPLMIAAMFG SKQILSYVLE TGAVDVNRAC GLDGATALHC AVAGGSASSP DVVKLLLNAS  120
ADTNSLDANG NRPGDLMVPY LNSSFNLRRI ECLLTGSSNI GEECVLPDHA IKPMEEQVDQ  180
QILIPATSKD GSEKKEYPAD ISLPDIKNGI YGTDEFRMYT FKVQPCSRAY SHNWTECPFV  240
HPGENARRRD PRKYHYSCVP CPEFRKGTCR LGDACEYAHG IFECWLHPAQ YRTRLCKDET  300
GCTRRVCFFA HKTEELRPLY ASTGSGLPSP TSFSNGASSL DMTSISPITL GSPSHLVPPA  360
STPPMTPLGA SPMNGSMWQN HPNIGPPALQ LSRSRLKTAS SARDMDLDAK LLGLESYRRR  420
QQQLMDEISS LSSPTSWNNT LAPASAFAAS SVDQSGDVNR LRGVKPTKLD DIFGSLDDAI  480
LSQLQGSFLN NSASQVQSPT GMQIRQNINQ HIRSSYPASL SSSPVRSFPS FGIDPSGAAS  540
AAVLNSRAAA FAKRSQSFID RSTVNRLSGL SSPASSANVM PSTRSDWGSA DGKLDWAIQK  600
EELNKLRKSA SFGLRSSSSS STTPTASMLA TGDDPDVSWG QSLAKNAPSV EHGHFGFEEQ  660
HRQHHLNIGG SEMLPSWVEQ LYMEQEQIVA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016084.20.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2R6QJB30.0A0A2R6QJB3_ACTCH; Zinc finger CCCH domain-containing protein
STRINGEOY337030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein