PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn300421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | WRKY | ||||||||
Protein Properties | Length: 260aa MW: 28066.9 Da PI: 5.6391 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 50 | 5.9e-16 | 127 | 166 | 21 | 59 |
-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 r+YYrC+++ gC ++k+ver+++dp ++++tY eHnh+ Achn300421 127 RRGYYRCSTSkGCLARKQVERNRSDPGMFIVTYAAEHNHP 166 599****9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 4.7E-10 | 116 | 167 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.0E-16 | 123 | 168 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-13 | 125 | 166 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-13 | 126 | 168 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.459 | 128 | 168 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MADDWDLHAV VRGCAAATTA AATSSSTTTT GSDQFQFFPD PIEPRRSESV EVFHDLFKPF 60 VSELQPLISR NRPISPLSVL GGLQDLSSPQ QQRQQQQKQQ QKQFVAGSRA RVSANNTSHT 120 PSPRSKRRGY YRCSTSKGCL ARKQVERNRS DPGMFIVTYA AEHNHPVPTH RNSLAGSTRQ 180 KPVTPPSVSA GETSQPSCSS APVSPAREDL IEDEDDDFGV SDMVVGDDFF EGLEEIAGDC 240 FSGELQESLP ANRLAGGGG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028057975.1 | 2e-71 | WRKY transcription factor 22 | ||||
Swissprot | O04609 | 2e-55 | WRK22_ARATH; WRKY transcription factor 22 | ||||
TrEMBL | A0A2R6R9N4 | 1e-149 | A0A2R6R9N4_ACTCH; WRKY transcription factor | ||||
STRING | EOX95862 | 2e-65 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2591 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 6e-51 | WRKY family protein |