PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn296021

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

CPP

Protein Properties

Length: 764aa MW: 83459.8 Da PI: 5.5533

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn296021	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.9	3.1e-16	499	537	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk Achn296021 499 CKRCNCKKSKCLKLYCECFAAGVYCVEPCTCQDCFNKPA 537 89**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51379	7.492	117	149	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain
SMART	SM01114	3.4E-17	497	538	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	18.75	498	591	IPR005172	CRC domain
Pfam	PF03638	8.7E-12	500	535	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence Send to blast
MDTPVRNQIA APGSQFEESP VFNYINNLSP IKTVKSTSIS QTFNPYSFAS LPSIFTSPHV 60 SSLKESRCLR SESLYEWLRL HFRHHFSDPS KSEFSSDNET KVGGTGVVTD VLRNSDEQPE 120 NFDPGRCIGE CSVETTYECP ELAIEVSRTL SYDCGSPDCS ATPCHRIETN CVSELDGPSN 180 SVVQSGQEVS EARFLGSRVH LEGITNIEQT KEGGRRDWES LITDATGLLI FDSLNDIEAS 240 KGHFQESLDP GTRLCASLIS GFTHDEINHL QITEVVGPVG LEQNESENPP SQVGEEGHLK 300 DIEATRDTLA STSINTCVAE SSEQPDNEHV SNLHRGIRRR CLVFEMAGVY RKHLDDSSSS 360 GSSILSQSDV NIESSDKQLV PIRTSNGSSR CDLPGIGLHI NALARTSKNC IISHDLASGR 420 QLINEPSSAA PLHSLTTGQE SLNKSLVVTS AERNMGHEEN GAQNIEDASQ AFGYIEEFSQ 480 SSPKKKRRRL EIAGESEGCK RCNCKKSKCL KLYCECFAAG VYCVEPCTCQ DCFNKPAHED 540 IVLATRKQIE SRNPLAFAPK VIRSSDSVRE IGGGVGCSIN CRCEGCKNAF GRKDGSTLIE 600 ADTELEEEET ETSEKSVVNK SLRKNVIQNS KEQNPDSALP ETPLRSVSAL VQLPFSSKSK 660 PPRSSLLSIG SSSGYYGIQK FGKPNFLQPQ PKFEKRIQDI QEDEMPEILQ GNSSPISGVK 720 SSSPNSKRVS PPHTDFGSSP GQRSSRKLIL QSIPSFPSLT PKH*

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence Send to blast

MDTPVRNQIA APGSQFEESP VFNYINNLSP IKTVKSTSIS QTFNPYSFAS LPSIFTSPHV  60
SSLKESRCLR SESLYEWLRL HFRHHFSDPS KSEFSSDNET KVGGTGVVTD VLRNSDEQPE  120
NFDPGRCIGE CSVETTYECP ELAIEVSRTL SYDCGSPDCS ATPCHRIETN CVSELDGPSN  180
SVVQSGQEVS EARFLGSRVH LEGITNIEQT KEGGRRDWES LITDATGLLI FDSLNDIEAS  240
KGHFQESLDP GTRLCASLIS GFTHDEINHL QITEVVGPVG LEQNESENPP SQVGEEGHLK  300
DIEATRDTLA STSINTCVAE SSEQPDNEHV SNLHRGIRRR CLVFEMAGVY RKHLDDSSSS  360
GSSILSQSDV NIESSDKQLV PIRTSNGSSR CDLPGIGLHI NALARTSKNC IISHDLASGR  420
QLINEPSSAA PLHSLTTGQE SLNKSLVVTS AERNMGHEEN GAQNIEDASQ AFGYIEEFSQ  480
SSPKKKRRRL EIAGESEGCK RCNCKKSKCL KLYCECFAAG VYCVEPCTCQ DCFNKPAHED  540
IVLATRKQIE SRNPLAFAPK VIRSSDSVRE IGGGVGCSIN CRCEGCKNAF GRKDGSTLIE  600
ADTELEEEET ETSEKSVVNK SLRKNVIQNS KEQNPDSALP ETPLRSVSAL VQLPFSSKSK  660
PPRSSLLSIG SSSGYYGIQK FGKPNFLQPQ PKFEKRIQDI QEDEMPEILQ GNSSPISGVK  720
SSSPNSKRVS PPHTDFGSSP GQRSSRKLIL QSIPSFPSLT PKH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	482	489	PKKKRRRL
2	483	488	KKKRRR
3	485	489	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	4e-44	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	4e-44	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028108166.1	0.0	protein tesmin/TSO1-like CXC 3
TrEMBL	A0A2R6QW90	0.0	A0A2R6QW90_ACTCH; Protein tesmin/TSO1-like
STRING	VIT_05s0020g03880.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2467	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-104	Tesmin/TSO1-like CXC domain-containing protein