PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn294781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | SRS | ||||||||
Protein Properties | Length: 176aa MW: 19672.1 Da PI: 7.0211 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 80.7 | 3.7e-25 | 76 | 133 | 97 | 154 |
DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ +e+ ++P+e++ ea f+cvrvss d++ +++aYqtav+igGh+fkGiLydqG+ee Achn294781 76 SHRVEVGNFPNELQMEATFQCVRVSSHDNEVDQYAYQTAVNIGGHIFKGILYDQGPEE 133 55677888************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.4E-22 | 77 | 132 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 6.8E-24 | 84 | 131 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MVQRPESTPR DPLYLASRPH LSIHTVWTHD AVLKPHHSRV SSLKALLQSC LNNWSTSSNW 60 VYMKEGGPLI ADLTLSHRVE VGNFPNELQM EATFQCVRVS SHDNEVDQYA YQTAVNIGGH 120 IFKGILYDQG PEETTHQPNL ITNPILPTNT TSPSTNPSAP NAFMPARYYF PYPKS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028065859.1 | 1e-33 | protein SHI RELATED SEQUENCE 1-like | ||||
TrEMBL | A0A2R6R6Q5 | 1e-65 | A0A2R6R6Q5_ACTCH; Protein SHI RELATED SEQUENCE like | ||||
STRING | cassava4.1_028712m | 1e-23 | (Manihot esculenta) | ||||
STRING | XP_009607768.1 | 3e-23 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 8e-22 | Lateral root primordium (LRP) protein-related |