PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn294101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 25619.1 Da PI: 8.883 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lvd+++ +G g+W+t ++ g+ R++k+c++rw +yl Achn294101 13 KGAWTKQEDQKLVDYIRTHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 60 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ Achn294101 66 RGNFAQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 8999******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.535 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.77E-28 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.35E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.129 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.27E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MRKPCCDKQD TNKGAWTKQE DQKLVDYIRT HGEGCWRTLP KAAGLLRCGK SCRLRWINYL 60 RPDIKRGNFA QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH VKRKLISLGI 120 DPNNHRLNQT PPRPQNPCLS GSTNGPSRPS KMYLANNDLL SDAASCLEDD TSASDRDLNL 180 NLSIDVPPNL PFFGETKPQD HIKELQVTEE LVEFRRSPTL FLFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 10 | 115 | 4 | 108 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT225482 | 1e-127 | KT225482.1 Vaccinium corymbosum transcription factor MYB4 (MYB4) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007033078.2 | 1e-105 | PREDICTED: transcription repressor MYB6 | ||||
Refseq | XP_028098931.1 | 1e-105 | myb-related protein 330-like | ||||
Swissprot | Q9S9K9 | 2e-76 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A2R6RYC3 | 1e-159 | A0A2R6RYC3_ACTCH; Myb-related protein | ||||
STRING | EOY04004 | 1e-105 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 8e-79 | myb domain protein 3 |