PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn293721

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

M-type_MADS

Protein Properties

Length: 70aa MW: 7784.08 Da PI: 10.6628

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn293721	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.1	7.6e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk rqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gkl+eys+ Achn293721 9 KRIENKVSRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLFEYST 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.651	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.20E-35	2	61	No hit	No description
SuperFamily	SSF55455	7.85E-29	2	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-31	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-31	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MGRGPVQLKR IENKVSRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFST KGKLFEYSTD 60 SSAYFATKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-20	1	60	1	61	MEF2C
5f28_B	1e-20	1	60	1	61	MEF2C
5f28_C	1e-20	1	60	1	61	MEF2C
5f28_D	1e-20	1	60	1	61	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ113356	2e-56	HQ113356.1 Actinidia chinensis FUL-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017241578.1	7e-35	PREDICTED: truncated transcription factor CAULIFLOWER A
Swissprot	Q41274	3e-34	AGL8_SINAL; Agamous-like MADS-box protein AGL8 homolog
TrEMBL	A0A438IMY3	2e-34	A0A438IMY3_VITVI; Agamous-like MADS-box protein AGL8-like
STRING	cassava4.1_030691m	4e-36	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	1e-36	AGAMOUS-like 8

Publications ? help Back to Top
Menzel G,Apel K,Melzer S Identification of two MADS box genes that are expressed in the apical meristem of the long-day plant Sinapis alba in transition to flowering. Plant J., 1996. 9(3): p. 399-408 [PMID:8919916]