PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn288921
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 275aa    MW: 30386.1 Da    PI: 6.9705
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn288921genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.7e-18193227135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Achn288921 193 CQHCLAEKTPQWRAGPMGPKTLCNACGVRYKSGRL 227
                 *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.102.9E-14186224IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.78187223IPR000679Zinc finger, GATA-type
SMARTSM004016.1E-17187237IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15189250No hitNo description
CDDcd002021.53E-12192240No hitNo description
PfamPF003201.1E-15193227IPR000679Zinc finger, GATA-type
PROSITE patternPS003440193218IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEAVLDPGTR FRVEDLLNFS LDAGEEDDDD EKDQKVPSSS SLESSNPHNH DPDDHQSIPL  60
PEFVEEELEW LLNKDAFPKV ETCLDILSDN PGIVPNHHSP VSVLENTITT PAAAATSTSN  120
SSTTTSCCGG SILVPVRYPV KARSTRQRRR RCSFSHLPSQ QLWCWAQENI KNSKQEFRAA  180
GPPSASAKIG RRCQHCLAEK TPQWRAGPMG PKTLCNACGV RYKSGRLVPE YRPASSPTFS  240
SLLHSNSHRK VIEMRRQKQM GEMLLNEACG YSVG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028113026.11e-109GATA transcription factor 1-like
SwissprotQ8LAU91e-45GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A2R6S0B70.0A0A2R6S0B7_ACTCH; GATA transcription factor
STRINGXP_009618081.11e-79(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-45GATA transcription factor 1