PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn288781
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 325aa    MW: 36805 Da    PI: 5.2082
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn288781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000426183323
                ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                C+   Cgk+F +   L++H   H
  Achn288781 61 CSyeGCGKTFIDAGALRKHSHIH 83
                77779**************7766 PP
2zf-C2H211.20.0011180205123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 y Cp   C k + + + L+ H+r+ H
  Achn288781 180 YCCPyeGCEKAYIHEYKLNLHLRReH 205
                 7899********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-135583IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.88E-65695No hitNo description
PROSITE profilePS5015710.7835988IPR007087Zinc finger, C2H2
SMARTSM003550.00325983IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806183IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-48497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.66E-5175203No hitNo description
Gene3DG3DSA:3.30.160.605.4E-8175203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.044180205IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954180210IPR007087Zinc finger, C2H2
PROSITE patternPS000280182205IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MASRCFQMLN LLFQCTIYCY VKEKWVQNGA EATLKAKKEK SKEPEAVEPE IEPATEVLFL  60
CSYEGCGKTF IDAGALRKHS HIHGERQYVC HYDGCGKLSF LHLYRPVSSV LSISSPAIKW  120
SSITLKLFPF NLSSTRNSPG ITLQNNVDIT PKYVQPPEKL PKTSKPSYAA YGSASSDRPY  180
CCPYEGCEKA YIHEYKLNLH LRREHPGHLG DDNAKNAQSA IDNDIDEGSD QDAYAGKRVN  240
NKNQKQSKPK PNLKLPPAKV ARKGSTATPA NLNVMKKPWP VKEEIYEEDE EDSEETEEDR  300
DNVEDGWRYE EHNEDDDEET EYED*
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218753.18e-99PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-69YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2R6RGI11e-117A0A2R6RGI1_ACTCH; Zinc finger, C2H2 protein
STRINGXP_008218753.13e-98(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.24e-54C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]