PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn288711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 209aa MW: 24226.1 Da PI: 6.0384 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 58.1 | 2e-18 | 16 | 71 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGg.havDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v Y+eC++Nh ++ +DGC +f++ +++ + al Ca CgCHR +HRre++ Achn288711 16 VIYRECQRNHSIQPHRlLLLDGCPDFVNLDHNATPELALYCATCGCHRQYHRREEV 71 79*********997651578********977778899****************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-16 | 16 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-6 | 16 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 16.049 | 18 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.58E-14 | 142 | 203 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.9E-20 | 143 | 202 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.5E-21 | 145 | 200 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MANNNNANAR RWATIVIYRE CQRNHSIQPH RLLLLDGCPD FVNLDHNATP ELALYCATCG 60 CHRQYHRREE VMVQVEPATV EVIHQLAVGV AAPPPHHHHG GAPLPAPQEE DGHHPVPEEN 120 LGDGEVEEEK EGEEEWRPEW VVRRRERRTR FTPEQRQAMR AYADGLEWRL QGHCEESLCR 180 FCEEIGVSPQ VFKVWMKNNK RKYYDVED* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6RGK1 | 1e-152 | A0A2R6RGK1_ACTCH; Zinc-finger homeodomain protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 6e-10 | homeobox protein 33 |