PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn284401

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB

Protein Properties

Length: 291aa MW: 33436.4 Da PI: 9.9961

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn284401	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1e-17	15	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ Achn284401 15 RGHWRLSEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60 899***************************.*********996 PP
2	Myb_DNA-binding	56	9.4e-18	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T+eE+++l a++++G++ W++I+r ++ gRt++ +k++w+ Achn284401 67 RKPFTEEEEKRLFVAHRLHGNK-WALISRLFP-GRTDNAVKNHWHV 110 789*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.159	10	61	IPR017930	Myb domain
SMART	SM00717	1.7E-14	14	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.36E-29	14	108	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-26	16	67	IPR009057	Homeodomain-like
Pfam	PF13921	8.5E-17	18	78	No hit	No description
CDD	cd00167	9.16E-13	18	59	No hit	No description
PROSITE profile	PS51294	23.55	62	116	IPR017930	Myb domain
SMART	SM00717	5.9E-15	66	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-20	68	115	IPR009057	Homeodomain-like
CDD	cd00167	1.52E-10	69	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MDGDASGDDA GTCPRGHWRL SEDEKLRQLV EQYGPQNWNS IAEKLQGRSG KSCRLRWFNQ 60 LDPRINRKPF TEEEEKRLFV AHRLHGNKWA LISRLFPGRT DNAVKNHWHV IMARKGREKS 120 NSMLCGKRRY YQYESSDSNS NFNGNSNPQD HYGLKNARLF EFQVPNKDFR VFSVSPSCSS 180 PSWSTSTKPI SLTTRKLYPV DLFGRDRDYY WERESSNYKR TVASPFGNSK FGDGNGKHGM 240 VKKELVRFGE NSLKFGKIGA IDIDDQEHGD EHFKRKIVPF IDFLGVGISS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-32	15	115	7	107	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028084369.1	1e-108	transcription factor MYB56-like
TrEMBL	A0A2R6RP06	1e-109	A0A2R6RP06_ACTCH; Transcription factor like
STRING	VIT_18s0001g15260.t01	1e-99	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1784	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	4e-64	myb domain protein 52