PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn284071

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 709aa MW: 81033.6 Da PI: 6.9159

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn284071	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.8	2.3e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel Achn284071 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYSQLKPSEDGKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFSNIHNHELL 152 6*************999887455667****************9***************98887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.2E-23	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.174	550	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.2E-6	558	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-4	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MSELTSVVRE ASENGTDLSP DDIGTIEEMP EDTILSRQTS VNLIPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYS QLKPSEDGKL QRNRKSSRCG 120 CQAYMRIVKR ADFDVPEWRI TGFSNIHNHE LLKSNEVQLL PAYCTMSADD KSRICMFAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVD KDNDPIDLLK MCKDKKDKDP 240 NFKYNFKIDA NNRLEHIAWS YSSSIRSYEA LGDAVVFDTT HRMDAYDMLL GIWIGVDNHG 300 MNCFFGCVLL RDENIHSFSW ALKTFLAFMN GKAPETILTD QNVWLKEALA VEMPRTKHVF 360 CIWHIISKFS DWFSVLLGSQ YDKWKAEFHR LYNMHSVEEF EVGWREMVDT YGLHGNKHIV 420 SLYALRTFWA LPFLRSYFFA GMASSFQSES ISAYIQRFLS AQSVLDNFVE QLAVVVDVKD 480 AGSKHKMQRK IQKVSLKTGS PIESHAATVL TPYAFCKLQE ELVLAPQYAS LMADESCFLV 540 RHHTEIDGGC KVIWAPHEEF IGCSCHQFEF SGILCRHVLR VLSTNNCFHI PDQYLPIRWR 600 DVASSMMKPV QVPTSEEHAV KVQLFQSIVS TLITESVETE ERLDVAYDQI ATVLSHIKEF 660 SGPSHDHVDM YRKRRRCSVP CYGQFGHEAT DCPMMGGDDM NGDSLGFL*

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MSELTSVVRE ASENGTDLSP DDIGTIEEMP EDTILSRQTS VNLIPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYS QLKPSEDGKL QRNRKSSRCG  120
CQAYMRIVKR ADFDVPEWRI TGFSNIHNHE LLKSNEVQLL PAYCTMSADD KSRICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVD KDNDPIDLLK MCKDKKDKDP  240
NFKYNFKIDA NNRLEHIAWS YSSSIRSYEA LGDAVVFDTT HRMDAYDMLL GIWIGVDNHG  300
MNCFFGCVLL RDENIHSFSW ALKTFLAFMN GKAPETILTD QNVWLKEALA VEMPRTKHVF  360
CIWHIISKFS DWFSVLLGSQ YDKWKAEFHR LYNMHSVEEF EVGWREMVDT YGLHGNKHIV  420
SLYALRTFWA LPFLRSYFFA GMASSFQSES ISAYIQRFLS AQSVLDNFVE QLAVVVDVKD  480
AGSKHKMQRK IQKVSLKTGS PIESHAATVL TPYAFCKLQE ELVLAPQYAS LMADESCFLV  540
RHHTEIDGGC KVIWAPHEEF IGCSCHQFEF SGILCRHVLR VLSTNNCFHI PDQYLPIRWR  600
DVASSMMKPV QVPTSEEHAV KVQLFQSIVS TLITESVETE ERLDVAYDQI ATVLSHIKEF  660
SGPSHDHVDM YRKRRRCSVP CYGQFGHEAT DCPMMGGDDM NGDSLGFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	671	675	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028058977.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2R6P5S7	0.0	A0A2R6P5S7_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_07s0005g01120.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13535	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]