PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn281151
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CPP
Protein Properties Length: 812aa    MW: 89242.4 Da    PI: 6.238
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn281151genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.12.7e-16515552340
         TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Achn281151 515 CKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQDCFNKP 552
                 89**********************************96 PP
2TCR50.34.9e-16599637139
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Achn281151 599 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 637
                 589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.6E-17513554IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.394514639IPR005172CRC domain
PfamPF036389.4E-12516551IPR005172CRC domain
SMARTSM011141.5E-17599640IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11601637IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MGEEGEKLER ESETEACGSG VTVMETPDRN RITHPVSKFE DSPVFNYINS LSPIKTVKSI  60
RISQSFNSFS FASLPSIFTS PHVSSVKESR FLRRHSFSDP SKPEFSSDNG NKVGTSEGVT  120
DVAHNLDEQQ ENFDPGSYIG EVSVESTYEC SKLATEVSQT LNYECCSPDC TATACREIET  180
KCVSELPRTS KFVVPYNHEV SQPIFVESGM HLEGIRNIEQ NREADGCDWD NLISDATDLL  240
TFESPNNADA FKGPFQHPGR SLCTSLASSE FTQYEISDLQ NTLSIHPVGV EDHESENPPQ  300
VGEEGHLTEI EATGDILAGT SLNKCVDGEP SNQIDNEPVS NLHRGMRRRC LDFETAGTRK  360
RHLDHSSHSG NSMLSQSDVN VESIDKQLVP AKPVNDSSRC ILPGIGLHLN SLARTSKEYN  420
VVSRETLASG SQLIIDPGST ASFHSLSTCQ EPLNKSLAVM SMERNNGPAE SRFQGTKDAS  480
AGPGYMPSED TNQSSPRKKR HVQRRLEDAR ESEGCKRCNC KKSKCLKLYC ECFAAGVYCV  540
EPCSCQDCFN KPIHEDTVLA TRKQIESRNP LAFAPKVLRS SDSLPEIGDE SSKTPASARH  600
KRGCNCKKSG CLKKYCECYQ GGVGCSINCR CEGCKNAYGR KNGSVSIGAE AELEEEETET  660
HDKCVADESV PKILIPNSME QNPDSILQAT PLRGVRTSVQ LPFSSKNKPP RSSFLPIGSS  720
SGFYGSQRFG KPNFLQHQPK FEKRVQTVQE EEMPQILQHN CSPISGIKSS SPNSKRVSPP  780
HCDFGLSPHR RSSRKLILQS IPSFPSLTSK D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1851663612120Protein lin-54 homolog
5fd3_B8e-1851663612120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028108166.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A2R6PK840.0A0A2R6PK84_ACTCH; Protein tesmin/TSO1-like
STRINGVIT_05s0020g03880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-156Tesmin/TSO1-like CXC domain-containing protein