PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn280471
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 348aa    MW: 39224.5 Da    PI: 10.1829
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn280471genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.5e-193771797
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 +pkkfa++ +  ++ +  +t++ +sg +W+v l    +++++++++GWk Fv+++ L+e D+++Fk++g+s+f   v +f
  Achn280471  3 AIPKKFANHLQ--EKLPENVTIKGPSGAKWNVGL--VTSGDTMLFKQGWKVFVEDHSLEEDDVLIFKYNGDSRF--DVLIF 77
                59*****5445..457889***************..999999****************************9999..77776 PP
2B343.55.8e-14225305588
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..S CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..s 88 
                 +  s+v +   +++p + a +h   +++s++++l+  + ++W+ +++y+ ++g+  lt+GW++F+ +n+L+e D+++F+l g   +
  Achn280471 225 MRLSHVYRGFYMSIPSEWALSHL--PRKSQEVILRM-KEKTWRARFNYKVYGGG--LTGGWRNFALENNLEEFDVCLFELAGGntD 305
                 55589999999***********5..34666888776.88*******99999999..9**********************9964233 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.6E-8180IPR003340B3 DNA binding domain
PROSITE profilePS5086316.299180IPR003340B3 DNA binding domain
PfamPF023621.2E-15377IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-21378IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-20378IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-18478No hitNo description
Gene3DG3DSA:2.40.330.106.7E-21216315IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-18220315No hitNo description
SuperFamilySSF1019363.14E-16220315IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.7E-11221317IPR003340B3 DNA binding domain
PROSITE profilePS5086311.73221317IPR003340B3 DNA binding domain
PfamPF023624.9E-12224306IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MQAIPKKFAN HLQEKLPENV TIKGPSGAKW NVGLVTSGDT MLFKQGWKVF VEDHSLEEDD  60
VLIFKYNGDS RFDVLIFNGR NLCEREASYF VRKCGHTELD GGSRTKRNIV ESSVEVSHTE  120
DYAPSKRPKK DDNATPVKKG RHDRDNGRIR KGARSWLLAE RETTNAETST YAGPEKVNSN  180
AKKGSGSAYP VQHVSNRRLV TEGEKEKALQ MAHAASTKDS IIVVMRLSHV YRGFYMSIPS  240
EWALSHLPRK SQEVILRMKE KTWRARFNYK VYGGGLTGGW RNFALENNLE EFDVCLFELA  300
GGNTDAIVMD VSVFRVVDEV TPLTRVTSFS SPHGKQSKRL RRKKKLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1619532022146B3 domain-containing transcription factor VRN1
4i1k_B1e-1619532022146B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339345LRRKKKL
2340345RRKKKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061149.11e-166B3 domain-containing protein REM16
TrEMBLA0A2R6RN220.0A0A2R6RN22_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-59B3 family protein