PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn279951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 194aa MW: 22067.8 Da PI: 4.4829 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 126.6 | 2e-39 | 9 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrF Ptdeelvv++L++k++ +++ evi+++d+y ++Pw+L+ k+ ae ++wyfFs++ +nr+t +gyWk g d++++++ +++ Achn279951 9 LPPGFRFYPTDEELVVHFLHRKAALLPCNP-EVIPDLDLYPYDPWELDGKAMAEGNKWYFFSRKT--------ANRITGNGYWKPLGVDEPIFTSASKK 98 79*************************999.99**************977778899*****9974........58************************ PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk vfy g++p+g+kt+W+m+ey l Achn279951 99 VGMKKCYVFYIGEEPEGVKTNWIMQEYML 127 ***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-50 | 6 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.495 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-23 | 10 | 126 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGDDNNVNLP PGFRFYPTDE ELVVHFLHRK AALLPCNPEV IPDLDLYPYD PWELDGKAMA 60 EGNKWYFFSR KTANRITGNG YWKPLGVDEP IFTSASKKVG MKKCYVFYIG EEPEGVKTNW 120 IMQEYMLSES GSSSSRSSKR RGNPKVDYSK WVLCRVYEHD CDDGGGDGME LSCLDEVFLS 180 LDDLDEISFP NYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-45 | 5 | 161 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-45 | 5 | 161 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-45 | 5 | 161 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-45 | 5 | 161 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-45 | 5 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 8e-45 | 5 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 8e-45 | 5 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 8e-45 | 5 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 8e-45 | 5 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 8e-45 | 5 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 8e-45 | 5 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 8e-45 | 5 | 160 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 8e-45 | 5 | 161 | 13 | 167 | NAC domain-containing protein 19 |
4dul_B | 8e-45 | 5 | 161 | 13 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028059124.1 | 1e-110 | NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 4e-79 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A2R6RGN9 | 1e-140 | A0A2R6RGN9_ACTCH; NAC domain-containing protein | ||||
STRING | XP_009622295.1 | 3e-98 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3766 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 6e-80 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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