PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn276611
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 325aa    MW: 36073.7 Da    PI: 8.6686
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn276611genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.8e-18208242135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C t kTp+WR gp g+ktLCnaCG+++++ +l
  Achn276611 208 CLHCATDKTPQWRTGPMGPKTLCNACGVRFKSGRL 242
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.2E-17202252IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.991202238IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-15204266No hitNo description
Gene3DG3DSA:3.30.50.104.4E-14206240IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.94E-14207254No hitNo description
PfamPF003201.2E-15208242IPR000679Zinc finger, GATA-type
PROSITE patternPS003440208233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MNIRVTLLFD LKFKWPTTTI GILTLFLSPH SPTIIPTQKN NNAMETPELY QGGYYNADAK  60
SDHFVVEDLL DVPNDENALA HSTFEAAAAE SSAVTAVNSC NSSFSGSEPH FSGDMDLCVP  120
KTKEKRKKKE RYAAFSLMEG PEIHELAPED ARPNPVFNPD VSVPGKARSK RSRAAPCDWA  180
SRLSVLSPNK SMKQQAVAAE SGGDGRKCLH CATDKTPQWR TGPMGPKTLC NACGVRFKSG  240
RLVPEYRPAS SPTFVLTKHS NSHRKVMELR RQKEMQRAQS QSQTQAQLQH QPHQFINQNV  300
LFDVSNGEDY LIHQHVGPDF RQLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249552.11e-115PREDICTED: GATA transcription factor 12
SwissprotP697812e-70GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2R6Q2V41e-176A0A2R6Q2V4_ACTCH; GATA transcription factor
STRINGXP_010249552.11e-114(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-67GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]