PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn274561
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GeBP
Protein Properties Length: 460aa    MW: 50686.2 Da    PI: 4.6258
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn274561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573113.31.5e-35177280297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk........spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                 lfqrlw++eDei lLqG++d++a++g         + ++d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k+ sgke +f+++hdq +fe+s
  Achn274561 177 LFQRLWTDEDEIELLQGFLDYTAQRGGggggnssyHHHHDTAVFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKIGSGKEYVFKSPHDQATFEIS 275
                 79***********************987888764445569*********************************************************** PP

      DUF573  93 kkiWg 97 
                 +kiW 
  Achn274561 276 RKIWS 280
                 ****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-32178280IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MAVILLGRRG GRRNKPVNPF YKPQLARRTQ TQPTLTLTPL LSQPPLPMAS EEDPTVYGEE  60
DLDEDEEEDS EEDEDLNLPT SNPPQPDLDD DLDDDDDDLL DVDDDDDTSS SVGKVTVAIA  120
AVPTGDPSKP VTAGLVTVAA ADSLLPDPKR PRIEEVTIAA AAAGKKPPPA MDDSRRLFQR  180
LWTDEDEIEL LQGFLDYTAQ RGGGGGGNSS YHHHHDTAVF YDQIKSKLQL DFNKNQLVEK  240
LRRLKKKYRN VLNKIGSGKE YVFKSPHDQA TFEISRKIWS GGGLDDDEAN PNSNSNSNPN  300
PNPNPNFFDR NNNGIDANSS ERKGSKSRKR SRVKIEEKQQ FNLQVPQTAT PTLTPTATSV  360
PNLIEETARS CLSPLFKELL HNATMSGVYG SRGYSGVAAM NPMPLGFGSP VGLNFSGGNV  420
MDEKWRKQQI LELEVYSKRL ELVQDQIKSA LEELRSMGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079823.11e-146probable transcription factor At3g04930
RefseqXP_028079824.11e-146probable transcription factor At3g04930
RefseqXP_028079825.11e-146probable transcription factor At3g04930
TrEMBLA0A2R6QLC50.0A0A2R6QLC5_ACTCH; Transcription factor
STRINGSolyc02g083750.1.11e-108(Solanum lycopersicum)
STRINGXP_010271046.11e-108(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-54DNA-binding storekeeper protein-related transcriptional regulator